Hello
Dne St 5. listopadu 2014 15:08:27 jste napsal(a):
> I checked and I have phybase 1.3 installed but I don't remember if
> installed another version and THEN updated to 1.3 (maybe that could work).
> I am running phybase 1.3 and it works fine.
It seems it depends on the version of R You are r
Sorry, that should have been: http://www.phytools.org/mpma/phybase
All the best,
Liam J. Revell, Assistant Professor of Biology
University of Massachusetts Boston
web: http://faculty.umb.edu/liam.revell/
email: liam.rev...@umb.edu
blog: http://blog.phytools.org
On 11/6/2014 5:09 AM, Vojtěch Zei
Hi,
this could be the way, it is good idea, but for longer time, I'd rather find
replacement function...
Yours,
Vojtěch
Dne St 5. listopadu 2014 08:49:11, Daniel Fulop napsal(a):
> Hi,
>
> Just a quick suggestion. You could install the archived version of
> phybase in order to look at the R code
For a exercises in a class I teach, I previously posted source (with
NAMESPACE file), Windows & Mac OS binaries here:
http://www.phytools.org/phybase. Maybe this will help.
All the best, Liam
Liam J. Revell, Assistant Professor of Biology
University of Massachusetts Boston
web: http://faculty.
Hi,
Just a quick suggestion. You could install the archived version of
phybase in order to look at the R code for your function(s) of interest
and then reuse that code directly in your own R scripts (or put them in
separate scripts and "source" them). You can also then further taylor
those fun
Thank You for information and clarification. I wonder about an alternative
functions, but I don't know good function fitting my needs. But I still hope
there is at least one. :-)
Sincerely,
Vojtěch
Dne St 5. listopadu 2014 11:40:08, François Michonneau napsal(a):
> phybase 1.2 and 1.3 are both m
phybase 1.2 and 1.3 are both missing a NAMESPACE file which is required for
R versions above 3.0.0 and therefore can't be installed.
The latest archived version of phybase on CRAN (1.1) can however be
installed: http://cran.r-project.org/src/contrib/Archive/phybase/
Personally I would advise agai
Dne St 5. listopadu 2014 13:39:49 jste napsal(a):
> Hi I installed and used 1.3 recently (under Ubuntu 14.04). I am no expert
> and I can help you further but I wanted to assure you the package is
> working fine. I am currently using RStudio and this interface sometimes
> makes installing packages
Hello,
I'm looking for approaches how to get a species tree from set of gene trees. I
was looking at Phybase package https://code.google.com/p/phybase/ but it seems
to be abandoned and when I tried to install it, I ended up with error:
install.packages("~/stazene/phybase_1.3.tar.gz", repos=NULL,
