Hi Uwe,
read.GanBank has problems reading scaffolds. You may use a modified
version on GitHub:
https://github.com/emmanuelparadis/read.GenBank.FASTA
You can source it directly into R:
source("https://raw.githubusercontent.com/emmanuelparadis/read.GenBank.FASTA/master/read.GenBank.FASTA.R";
Emmanuel Paradis writes:
>
> Hi Matt,
>
> This is because this accession number does not point to the sequence.
> For this particular one, you could use:
>
> seq1 <- read.GenBank("U00096.3")
>
> Best,
>
> Emmanuel
>
> Le 27/02/2014 01:35, Matt Curcio a écrit :
> > Greetings all,,
> > I rec
Hi Matt,
This is because this accession number does not point to the sequence.
For this particular one, you could use:
seq1 <- read.GenBank("U00096.3")
Best,
Emmanuel
Le 27/02/2014 01:35, Matt Curcio a écrit :
Greetings all,,
I received this error while using R version 2.15.1 and ape 3.0.1
Greetings all,,
I received this error while using R version 2.15.1 and ape 3.0.11.
Error in FI[i]:LA[i] : NA/NaN argument
I have tried several approaches:
ref = "NC_000913.3"
seq1 = read.GenBank(ref)
Error in FI[i]:LA[i] : NA/NaN argument
ref = read.csv(file="test2.csv", head=T)
ref = str(ref)
