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Another possibility would be to look into the phylobase package, which
is precisely intended to do a more consistent job keeping traits and
data in synch ...
On 11-02-27 01:00 PM, Rich Glor wrote:
> Tony,
>
> The problem is that tiplabels just t
Hi Tony.
A couple of additional shortcuts would be:
# name rows of data frame with first column
> anolis.dat<-read.csv("anolis_data.csv",row.names=1)
# sort rows by $tip.label
> anolis.dat<-anolis.dat[anolisChrono$tip.label,]
# then
> attach(anolis.dat)
> plot(anolisChrono,adj=0.5, cex=0.4)
#
Tony,
The problem is that tiplabels just throws up the labels in the same order as
they appear in the matrix of data you're calling (i.e., anolisData). The first
entry in the the data matrix will therefore be associated with the first taxon
in your tree. This might not be obvious at first, b
Hello,
I am having a problem matching data and tip.labels when I plot trait data on a
phylogeny. I open the tree and data in R and convert the data to a dataframe
and then assign taxon names from the tree to the values in the dataframe. When
I simply print the dataframe the taxon names and data
