[R-sig-phylo] Reminder: Student application deadline for Summer of Code 2009

2009-03-29 Thread Hilmar Lapp
- Todd Vision and Hilmar Lapp National Evolutionary Synthesis Center http://nescent.org ___ R-sig-phylo mailing list R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo

[R-sig-phylo] Phyloinformatics Summer of Code 2010: Call for Student Applications

2010-03-29 Thread Hilmar Lapp
with their ideas as early on as possible. 2010 NESCent Phyloinformatics Summer of Code: http://hackathon.nescent.org/Phyloinformatics_Summer_of_Code_2010 - Todd Vision and Hilmar Lapp National Evolutionary Synthesis Center http://nescent.org ___ R

[R-sig-phylo] Phyloinformatics Summer of Code 2011: Call for Mentors

2011-02-21 Thread Hilmar Lapp
from May 23 to August 22. See http://bit.ly/soc2011-timeline for a full timeline of the whole program. Cheers, and we look forward to hearing from you! Karen Cranston Hilmar Lapp (*) Editing content on the NESCent Informatics wiki (f.k.a. Hackathon wiki) requires you to login

Re: [R-sig-phylo] Dealing with Bounded Trait Measures

2011-03-05 Thread Hilmar Lapp
/mailman/listinfo/r-sig-phylo -- === : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : === ___ R-sig-phylo mailing list R-sig-phylo@r

[R-sig-phylo] Deadline extension for full talk abstracts for Conference on Informatics for Phylogenetics, Evolution, and Biodiversity (iEvoBio)

2011-03-15 Thread Hilmar Lapp
Guralnick (University of Colorado at Boulder) (Co-chair) Cynthia Parr (Encyclopedia of Life) (Co-chair) Dawn Field (UK National Environmental Research Center) Mark Holder (University of Kansas) Hilmar Lapp (NESCent) Rod Page (University of Glasgow) ___ R-sig

[R-sig-phylo] Reminder: Deadline for full talk abstracts for Conference on Informatics for Phylogenetics, Evolution, and Biodiversity (iEvoBio)

2011-03-23 Thread Hilmar Lapp
provided by the Encyclopedia of Life (EOL). The iEvoBio 2011 Organizing Committee: Rob Guralnick (University of Colorado at Boulder) (Co-chair) Cynthia Parr (Encyclopedia of Life) (Co-chair) Dawn Field (UK National Environmental Research Center) Mark Holder (University of Kansas) Hilmar Lapp

Re: [R-sig-phylo] reading nexus file from treebase?

2011-03-25 Thread Hilmar Lapp
-- Emmanuel Paradis IRD, Jakarta, Indonesia http://ape.mpl.ird.fr/ ___ R-sig-phylo mailing list R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo -- === : Hilmar Lapp

[R-sig-phylo] Phyloinformatics Summer of Code 2011 - Call for student applications

2011-03-26 Thread Hilmar Lapp
/document/show/gsoc_program/google/gsoc2011/faqs - Karen Cranston and Hilmar Lapp National Evolutionary Synthesis Center http://nescent.org ___ R-sig-phylo mailing list R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo

Re: [R-sig-phylo] chronopl

2011-04-11 Thread Hilmar Lapp
you suggest should this be corrected to be current? -hilmar -- === : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : ___ R-sig-phylo mailing list R-sig-phylo@r-project.org

Re: [R-sig-phylo] Running Mesquite.R

2011-04-12 Thread Hilmar Lapp
Hi Alanna, I'm afraid I can't help you much on the Mesquite side, and that I don't use Windows doesn't help either, but would you mind posting your query to the Mesquite users list (which I know Wayne reads)? I could do that for you, but then you might miss the answers. -hilmar

[R-sig-phylo] Special Session on Metagenomics, Barcoding, and Biodiversity at iEvoBio (Informatics for Phyogenetics, Evolution, and Biodiversity)

2011-04-29 Thread Hilmar Lapp
Field (UK National Environmental Research Center) Mark Holder (University of Kansas) Hilmar Lapp (NESCent) Rod Page (University of Glasgow) ___ R-sig-phylo mailing list R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo

Re: [R-sig-phylo] PGLS (nlme?) problem, cont.

2011-05-30 Thread Hilmar Lapp
-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo -- === : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : ___ R-sig-phylo mailing list R-sig-phylo@r-project.org

[R-sig-phylo] Birds-of-a-Feather gatherings for Conference on Informatics for Phylogenetics, Evolution, and Biodiversity (iEvoBio)

2011-06-10 Thread Hilmar Lapp
(University of Colorado at Boulder) (Co-chair) Cynthia Parr (Encyclopedia of Life) (Co-chair) Dawn Field (UK National Environmental Research Center) Mark Holder (University of Kansas) Hilmar Lapp (NESCent) Rod Page (University of Glasgow) ___ R-sig-phylo

Re: [R-sig-phylo] comar.gee

2011-12-01 Thread Hilmar Lapp
for '(id)') -hilmar -- === : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : === ___ R-sig-phylo mailing list R-sig-phylo@r

[R-sig-phylo] Call for Abstracts open for Conference on Informatics for Phylogenetics, Evolution, and Biodiversity (iEvoBio)

2012-03-03 Thread Hilmar Lapp
) and by Biomatters Ltd., in partnership with the Society for the Study of Evolution (SSE) and the Systematic Biologists (SSB). The iEvoBio 2012 Organizing Committee: Hilmar Lapp, US National Evolutionary Synthesis Center (chair) Robert Beiko, Dalhousie University Nico Cellinese, University of Florida

[R-sig-phylo] Call for Lightning Talks now open for Conference on Informatics for Phylogenetics, Evolution, and Biodiversity (iEvoBio)

2012-03-13 Thread Hilmar Lapp
). The iEvoBio 2012 Organizing Committee: Hilmar Lapp, US National Evolutionary Synthesis Center (chair) Robert Beiko, Dalhousie University Nico Cellinese, University of Florida and Florida Museum of Natural History Robert Guralnick, University of Colorado at Boulder Rebecca Kao, Denver Botanic

[R-sig-phylo] Call for Challenge entries for conference on Informatics for Phylogenetics, Evolution, and Biodiversity (iEvoBio)

2012-03-21 Thread Hilmar Lapp
) and the Systematic Biologists (SSB). The iEvoBio 2012 Organizing Committee: Hilmar Lapp, US National Evolutionary Synthesis Center (chair) Robert Beiko, Dalhousie University Nico Cellinese, University of Florida Robert Guralnick, University of Colorado at Boulder Rebecca Kao, Denver Botanic Gardens Ellinor

[R-sig-phylo] Call for Software Bazaar entries open for Conference on Informatics for Phylogenetics, Evolution, and Biodiversity (iEvoBio)

2012-04-24 Thread Hilmar Lapp
Evolutionary Synthesis Center (NESCent) and by Biomatters Ltd., in partnership with the Society for the Study of Evolution (SSE) and the Systematic Biologists (SSB). The iEvoBio 2012 Organizing Committee: Hilmar Lapp, US National Evolutionary Synthesis Center (chair) Robert Beiko, Dalhousie

[R-sig-phylo] Mentorship program the 2012 iEvoBio conference

2012-05-16 Thread Hilmar Lapp
., in partnership with the Society for the Study of Evolution (SSE) and the Systematic Biologists (SSB). The iEvoBio 2012 Organizing Committee: Hilmar Lapp, US National Evolutionary Synthesis Center (chair) Robert Beiko, Dalhousie University Nico Cellinese, University of Florida Robert Guralnick, University

[R-sig-phylo] Last reminder: Deadline for iEvoBio Challenge Competitions is approaching

2012-06-11 Thread Hilmar Lapp
) and the Society of Systematic Biologists (SSB). The iEvoBio 2012 Organizing Committee: Hilmar Lapp, US National Evolutionary Synthesis Center (chair) Robert Beiko, Dalhousie University Nico Cellinese, University of Florida Robert Guralnick, University of Colorado at Boulder Rebecca Kao, Denver Botanic

Re: [R-sig-phylo] phylogenetic regression and pPCA with intraspecific variability

2013-08-20 Thread Hilmar Lapp
-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ -- === : Hilmar Lapp -:- Durham, NC

Re: [R-sig-phylo] ATTN Liam Revell: please contact me off-list

2013-10-03 Thread Hilmar Lapp
]] ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ -- === : Hilmar Lapp -:- Durham, NC

Re: [R-sig-phylo] Transition matrix for ace in ape

2014-05-23 Thread Hilmar Lapp
://www.mail-archive.com/r- sig-ph...@r-project.org/ -- Hilmar Lapp -:- informatics.nescent.org/wiki -:- lappland.io [[alternative HTML version deleted]] ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r

[R-sig-phylo] Population Genetics in R Hackathon - Open Call for Participation

2014-12-03 Thread Hilmar Lapp
letters December 15, 2014, and if your application is successful, we will need you to confirm attendance within 2 days of receiving notice, so please ensure you can receive and send email during the week of December 15. Sincerely, The organizing team: Thibaut Jombart, Hilmar Lapp, St�phanie

[R-sig-phylo] continued maintenance of the R-Phylo wiki

2015-05-06 Thread Hilmar Lapp
name in other ways that benefit this community, let me know and I'd be happy to consider transferring it. -hilmar [1] http://www.r-phylo.org/wiki/Special:AncientPages -- Hilmar Lapp -:- informatics.nescent.org/wiki -:- lappland.io ___ R-sig-phylo

Re: [R-sig-phylo] continued maintenance of the R-Phylo wiki

2015-05-06 Thread Hilmar Lapp
On 5/6/15, 4:56 PM, Hilmar Lapp wrote: If we do not hear expressions of interest in transfer of hosting before May 22 2015, then the wiki will have to be taken offline when NESCent closes. An XML dump of the wiki contents will be placed in the NESCent digital archive with Duke Libraries

[R-sig-phylo] thread response spam

2016-01-06 Thread Hilmar Lapp
, please email me off-list with the offending email account(s). It seems that at this time this issue is rather minor, but if it starts to get out of hand, I’ll change list subscription to moderate new members for their first post. -hilmar -- Hilmar Lapp -:- genome.duke.edu<http://genome.duke.

Re: [R-sig-phylo] continued maintenance of the R-Phylo wiki

2016-06-07 Thread Hilmar Lapp
ded > administration). If this would be acceptable, we can discuss more details. > Sincerely, > Vojtěch > > Dne úterý 7. června 2016 8:00:02 CEST, Hilmar Lapp napsal(a): >> As an FYI for this community, I have reconstituted the R-phylo wiki from its >> archive [1], and it is now live

Re: [R-sig-phylo] Accounting for phylogeny in binary predictor, binary response data

2016-02-11 Thread Hilmar Lapp
R-sig-phylo mailing list - R-sig-phylo@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-phylo >> Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ > > > [[alternative HTML version deleted]] > >

Re: [R-sig-phylo] Problem with bootstraping microstallite NJ tree

2016-01-22 Thread Hilmar Lapp
not be the case, because mail-archive.com is subscribed for this purpose. We’ll monitor this nonetheless.) -hilmar > On Jan 22, 2016, at 12:05 PM, Hilmar Lapp <hilmar.l...@duke.edu> wrote: > > >> On Jan 22, 2016, at 3:16 AM, Vojtěch Zeisek <vo...@trapa.cz> wrote: >&g

Re: [R-sig-phylo] Problem with bootstraping microstallite NJ tree

2016-01-22 Thread Hilmar Lapp
t of this step in terms of accessibility may be small. -hilmar -- Hilmar Lapp -:- genome.duke.edu -:- lappland.io signature.asc Description: Message signed with OpenPGP using GPGMail ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.

Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position

2016-09-12 Thread Hilmar Lapp
an avoid answering what may already have been answered? -hilmar -- Hilmar Lapp -:- genome.duke.edu -:- lappland.io ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive

[R-sig-phylo] caretaker / user for the rphylo.org domain?

2016-11-29 Thread Hilmar Lapp
If you have a commercial affiliation, I reserve to ask to be reimbursed for renewal costs since 2007. To academic affiliates I will donate it. Of course, anyone can pick it up after it comes out of the 30-day grace period post-renewal date.) -hilmar -- Hilmar Lapp -:- genome.

Re: [R-sig-phylo] RMesquite package

2017-09-13 Thread Hilmar Lapp
ofpoint.com/v2/url?u=http-3A__www.mail-2Darchive.com_r-2Dsig-2Dphylo-40r-2Dproject.org_=DwICAg=imBPVzF25OnBgGmVOlcsiEgHoG1i6YHLR0Sj_gZ4adc=eGWUXrFTNKFQ_7iv2ZZTsTpqF6jBUoOs67dzNTy0W_Y=nLcvm2XyiPq2SigT7Kkz_OgewmzetB3W_iyAKw37Moc=EjBfROurcmBvQ9sM3pHs1y9fP9PgQG5bBoN54T4tUsY= > -- Hilmar Lapp -:- genome.duke

Re: [R-sig-phylo] Will phyloXML in R be useful?

2017-12-14 Thread Hilmar Lapp
QET_RVPd9xB5EvNFPojxC-Pt7Ekpuk= >>> >>> sig-ph...@r-project.org/ >>> >>> >> > > [[alternative HTML version deleted]] > > ___ > R-sig-phylo mailing list - R-sig-phylo@r-project.org > https://urldefense.pr

Re: [R-sig-phylo] RMesquite package

2017-12-01 Thread Hilmar Lapp
tent-3Dwebmail=DwMFaQ=imBPVzF25OnBgGmVOlcsiEgHoG1i6YHLR0Sj_gZ4adc=eGWUXrFTNKFQ_7iv2ZZTsTpqF6jBUoOs67dzNTy0W_Y=XtWaA86jwYiS-E38jiKUh2-Wy8M5rAzczsBO5xyAJ8I=scG5V3F1V1aUsSumjdxEGkXJSzdFYTKIJK_9JZ4hzWU=> On Wed, Sep 13, 2017 at 5:28 PM, Hilmar Lapp <hilmar.l...@duke.edu<mailto:hilmar.l...@duke.edu>> wrote: Hi