Dear all,
A new testing version of ape (3.4-0.3) is available. It includes three
main new features:
- A new data class, "AAbin", to store amino acid sequences; there are
eleven new functions to generate and manipulate them including
translation from DNA.
- The function checkAlignment does
Hi Emmanuel,
this looks really cool - especially the new AAbin class. Looking forward to
playing with the new version!
Best
Thibaut
--
Dr Thibaut Jombart
Lecturer, Department of Infectious Disease Epidemiology
Imperial College London
https://sites.google.com/site/thibautjombart/
https://github.
FYI, in case one wants to install the testing version of ape to
R-devel (in my case, also a Windows machine), I found I needed:
install.packages("ape",contriburl="http://ape-package.ird.fr/bin/windows/contrib/3.2";)
Emmanuel, I've tested the testing version with paleotree and a few
other projects
Hi Emmanuel,
agree looks cool. When do you want to push the new version to CRAN? Newest
phangorn development has now a as.AAbin.phyDat function and dist.ml has
transition rate matrices for amino acids.
Does anybody know how to set .travis.yaml on github to install ape from
Emmanuel's repository ins