Just to follow up on this, here is an example using plotTree.barplot
with xlim set using args.barplot:
http://blog.phytools.org/2016/07/more-on-showing-barplot-next-to-plotted.html.
All the best, Liam
Liam J. Revell, Associate Professor of Biology
University of Massachusetts Boston
web:
Hey APE users,
I was wondering if there is a possibility to limit the dimensions of the x-axis
for barplots created with phydataplot(). With other words, in barplot() I have
the option to set xlim, how can I achieve the equivalent in phydataplot()?
Cheers and thanks in advance!
marian
Hi Marian.
You should be able to do it with the phytools function plotTree.barplot using
the argument args.barplot, supplied as a list containing the arguments you want
to pass to barplot. Not sure if this is on CRAN yet so you might have to
install from GitHub.
Let me know if you need
Hi Marian,
You can limit the space available to the whole figure when plotting the
tree (this is when the size of the plot is fixed). For example,
tr <- rcoal(10)
x <- 1:10
plot(tr, x.lim = 5)
phydataplot(x, tr)
This is equivalent to playing with xlim and/or ylim in barplot(). You
can also
