Hi all
I am using core-gen (Keller-Schmidt et al. 2011
https://www.bioinf.uni-leipzig.de/Publications/PREPRINTS/11-013.pdf)
to simulate host and parasite phylogenies. For each instance, a
get a pair of ultrametric trees reflecting the coevolutionary
history of
Hi all
I am fitting multitrait MuSSE models in the diversitree package to study
correlated evolution between binary variables and some transition rates (qij)
are negative. What is the meaning of negative transition rates?
Thanks in advance
Miguel VerdĂș
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Hi All,
I want to build a phylogenetic tree using codon alignment which is huge (280
MB). But there is no online information about suitable substitution models for
codon alignment: is it HKY or GTR or any other? All the information available
is about the substitution models for protein or nucle