Hello,
I am working with the phylo object from the ape package in my own package in
which I am manipulating the trees. I would like to check that I have
successfully created a valid ape object, but the `checkValidPhylo` function
appears to be solely interactive — it prints out a display, and al
Hi Elizabeth.
This does not do exactly what you want, but it is possible to use
capture.output() to grab the printout of checkValidPhylo() and then
grep() to see if it contains instances of "MODERATE" or "FATAL" errors.
The following simple function does that. It returns 0 if neither
MODERATE
Hi Elizabeth,
There's a lot of ways for trees to be wrong, and surely no
tree-checking or tree-fixing function can handle all possibilities.
Dating trees and simulating trees can be a messy business, so I used
to often hard-crash R with C++ errors all the time until I wrote
functions to try to avo
Thank you very much, I’ll try that!
> On Nov 5, 2019, at 2:20 PM, Liam Revell wrote:
>
> Hi Elizabeth.
>
> This does not do exactly what you want, but it is possible to use
> capture.output() to grab the printout of checkValidPhylo() and then
> grep() to see if it contains instances of "MODER
