Hi all,
My supervisor asked me to compute some parameter using Arlequin. I am used to
proceed my data with R and everything is in R compatible format. Then I would
like to know if there is any R command to export my data for Arlequin. I have
noticed that arlequin had a Rcmdr link, but I
Hi,
Yes it is possible in R, there is a package created for related purposes:
poppr or something like that… The dev version on github should be preferred.
I have seen several R work with polyploids and microsatelites, unfortunately… I
work with ALFP :p
Benjamin
Le Jeudi 29 Mai 2014
-project.org [r-sig-phylo-boun...@r-project.org]
on behalf of Gilles Benjamin Leduc [g...@hi.is] Sent: 29 May 2014 17:12
To: Vojtěch Zeisek
Cc: mailinglist R
Subject: Re: [R-sig-phylo] Triploid microsatellites?
Hi,
Yes it is possible in R, there is a package created for related
Hello,
I am looking the correct way to use the function which.edge {ape} and to
understand what it returns…
which.edge(phy, group)
so I use as phy an object I get like that:
as.phylo(dendroIcscan)
summary(as.phylo(dendroIcscan))
Phylogenetic tree: as.phylo(dendroIcscan)
Number of
://faculty.umb.edu/liam.revell/
email: liam.rev...@umb.edu
blog: http://blog.phytools.org
On 6/4/2014 11:41 AM, Gilles Benjamin Leduc wrote:
Hello,
I am looking the correct way to use the function which.edge {ape} and to
understand what it returns…
which.edge(phy, group)
so I use as phy
Hello,
Personally, I would advise you not to use a tree, for your 2 traits times 2
(+/-) makes 4 combinations, meaning a tree that is dichotomic cannot reveal
anything! Can you quantify your "diversification" without "rate"? How do you
obtain your "diversification rates"? If it is something
