Hi everyone,
I have been running PGLS with gls from NLME and phyl.resid from PHYTOOLS.
Most of my analyses are running well with no problems and give the same
results in both packages. With just a few of my dependent variables, which
happen to be evolutionary rates extracted from the program BAMM
Hi everyone,
I seem to have an issue where I cannot get any trees (real data or
simulated trees) to reorder. I've tried a lot of different things
including updating packages, restarting R, using a different computer. My
real trees have 501 tips, but I'm having this issue even when I simulate
tre
University of Massachussetts Boston
> email: liam.rev...@umb.edu
> web: http://faculty.umb.edu/liam.revell
>
> Sent from Outlook Mail for Windows 10 phone
>
>
>
> *From: *Zach Culumber
> *Sent: *Thursday, August 11, 2016 10:48 AM
> *To: *r-sig-phylo@r-project.org
> *S
Hi everyone,
I have a time-calibrated phylogeny with ~100 species and a list of ~1000
observed species assemblages which vary from 2-20 species in size. I'd
like to get the mean phylogenetic distance among species in each
assemblage, but I'm having difficulty finding a way to do this. The
comm.p
that work?
>
> All the best, Liam
>
> Liam J. Revell, Associate Professor of Biology
> University of Massachusetts Boston
> web: http://faculty.umb.edu/liam.revell/
> email: liam.rev...@umb.edu
> blog: http://blog.phytools.org
>
>
> On 2/2/2017 3:22 PM, Zach Culumb
Hi everyone,
We are interested in examining whether shifts in one continuous trait have
preceded shifts in another continuous trait through evolutionary time for a
phylogeny of ~80 species. To do this we were thinking of calculating the
change in the value of each trait for each tip to its most r
ylo de la part de
> Brian O'Meara
> *Envoyé :* mercredi 4 avril 2018 22:39
> *À :* Zach Culumber
> *Cc :* mailman, r-sig-phylo
> *Objet :* Re: [R-sig-phylo] quantitative state dependent diversification
> of another quantitative trait
>
> I think you want SLOUCH: Hansen
