Re: [R-sig-phylo] Phylogenetic network / ARG representation in ape

2021-05-21 Thread Yan Wong
Thank you Emmanuel. That’s very helpful. All the best Yan > On 21 May 2021, at 10:04, Emmanuel Paradis wrote: > > ... > Correct. The "phylo" and "evonet" classes ignore whether the (optional) > vector 'edge.length' represents time, number of mutations/substitions, > accumulated variance,

Re: [R-sig-phylo] Phylogenetic network / ARG representation in ape

2021-05-21 Thread Emmanuel Paradis
Hi Yan, - Le 18 Mai 21, à 23:48, Yan Wong y...@pixie.org.uk a écrit : > Dear R-Sig-Phylo, > > I’m interested in representations of ancestral recombination graphs (ARGs). > From > my reading of the extended Newick format (G. Cardona et al., 2008), and the > ape/evonet documentation, it

[R-sig-phylo] Phylogenetic network / ARG representation in ape

2021-05-18 Thread Yan Wong
Dear R-Sig-Phylo, I’m interested in representations of ancestral recombination graphs (ARGs). From my reading of the extended Newick format (G. Cardona et al., 2008), and the ape/evonet documentation, it appears as if the R-base representations of phylogenetic networks don't have a standard