What about using "Rf_length"?
---
#include
using namespace Rcpp;
// [[Rcpp::export]]
IntegerVector c_listlengths(List L) {
IntegerVector lens(L.size());
for (int i=0; i Rcpp::sourceCpp("example.cpp")
> l=list(1:3, 2:3, 1:6)
> l2=list(
I am the original maintainer of the mxnet R package.
Can you give me a little more information?
Best,
KK
On Tue, Aug 11, 2020 at 9:42 AM Jeskynar wrote:
> Hi
>
> I'm trying to build the mxnet library from source but the installation is
> failing somewhere inside loadModule('mxnet'). There's n
Please try the line below:
f(k) = *Rcpp::as*(dmvnorm(x.row(k), mean, sigma, give_log));
Best,
KK
On Wed, Dec 18, 2019 at 8:27 PM Shaami wrote:
> Hi Dear
>
> I want to use dmvnorm() function into an cpp function using RcppArmadillo
> I am trying to execute the following function. It gives me
What about using "TYPEOF"? Please see R Internals (
https://cran.r-project.org/doc/manuals/r-release/R-ints.html#SEXPTYPEs) for
more details.
#include
using namespace Rcpp;
// [[Rcpp::export]]
DataFrame rcpp_df(){
NumericVector numeric = {1,3};
IntegerVector integer = {1,3};
Character
, 2019 at 3:08 PM Brook Milligan wrote:
>
>
> > On Dec 6, 2019, at 3:58 PM, Qiang Kou wrote:
> >
> > I suggest you check all the examples of RInside. For example,
> >
> >
> https://github.com/eddelbuettel/rinside/blob/master/inst/examples/standard/rinside_sa
I suggest you check all the examples of RInside. For example,
https://github.com/eddelbuettel/rinside/blob/master/inst/examples/standard/rinside_sample16.cpp
This might meet your requirements.
Best,
Qiang Kou
On Fri, Dec 6, 2019 at 2:54 PM Brook Milligan wrote:
>
>
> > On Dec 6
RInside is to call the embedded R.
What do you want to do with R/Rcpp?
Best,
KK
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Hi, Sariya,
I think you need to recompile the GSL library with "-fPIC".
Best,
KK
On 2/1/19, 9:54 AM, "Rcpp-devel on behalf of Sariya, Sanjeev"
wrote:
I'd requested IT/cluster person of my floor with this and see if could
assist with error.
It still fails after changing to "-fP
For testing, I suggest you use a virtual machine.
You can find the instructions by the link below:
https://github.com/jeroen/solarisvm
Best,
KK
From: Rcpp-devel on behalf of
mike guggis
Date: Wednesday, January 9, 2019 at 6:04 AM
To: "rcpp-devel@lists.r-forge.r-project.org"
Subject: [Rcpp
NO_AUTO_PTR tells the Boost library no
> to use an idiom about which newer compiler complain a lot. (And eg I sent a
> PR to the dplyr team to add this which they, after sitting on it for three
> weeks, now merged.)
>
> | On Mon, Nov 5, 2018 at 11:34 PM Qiang Kou wrote:
> |
> | >
Hi, William,
I think you can send the PR first. It will trigger the unit tests on github.
Best,
KK
On Wed, Nov 7, 2018 at 10:52 PM William Nolan wrote:
> Okay. Changes are done and appear to work for *just* my test case. Of
> course I'd like to ensure I didn't break anything along the way.
Hi, William,
Can you give us a small piece of code to reproduce the error? That will
ease our discussion.
Best,
KK
On Tue, Nov 6, 2018 at 10:46 PM William Nolan wrote:
> Hi all,
>
> Longtime user and lurker here.
>
> I got "index error" thrown by Rcpp when trying to subset a matrix with
> wid
Hi, Nicholas,
First, what you reported is a known issue from boost [1], not Rcpp.
Second, this issue has been fixed in boost 1.69 [2] and the bh package
still uses 1.66.
Third, this warning won't block your submission to CRAN [3] [4].
I hope I answered your question.
Best wishes,
KK
[1] http
Hi, Vissarion,
If I understand your problem correctly, you can use "TYPEOF" from R's C API.
You can find more info on the type of an R object from
https://cran.r-project.org/doc/manuals/r-release/R-ints.html#SEXPTYPEs
The return value of this macro is an integer:
https://github.com/wch/r-source/
Hi, Mounia,
In Rcpp, using std::vector is preferred.
It is still possible to use pointers, however, I am afraid you need to
write your "as" and "wrap" by yourself. You can find how to develop them in
our documents.
Best,
Qiang Kou
On Thu, Sep 13, 2018 at 4:15 AM Mounia Z
StackOverflow [1] and the mailing
list.
Best wishes,
Qiang Kou
[1]
https://stackoverflow.com/questions/51314888/ld-warning-text-based-stub-file-are-out-of-sync-falling-back-to-library-file
On Fri, Jul 13, 2018 at 12:27 PM, Chun Leung To
wrote:
> When I am trying to source the cpp file, it gi
Hi, Jason,
The assert is from RcppEigen.
I think the reason is how "NDEBUG" is handled by Armadillo.
In your package, the RcppArmadillo header is included before RcppEigen:
https://github.com/jasonserviss/check/blob/master/src/RcppExports.cpp#L4
In RcppArmadillo:
https://github.com/RcppCore/Rc
On Mon, Jan 22, 2018 at 11:24 PM, Emmanuel Hamel
wrote:
>
> For the moment, I compile the GPU code with Visual studio 2015 to make à
> DLL, and then I call it from R. It is the only solution I found for the
> moment.
>
>
In MXNet R package, we also compile the cuda code using visual studio to
gen
ttp://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org
> _______
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>
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On OSX, "-strip-all" or "-strip-debug" should work.
See [1] for more information.
Best,
Qiang Kou
[1] http://releases.llvm.org/2.9/docs/CommandGuide/html/llvm-ld.html
On Mon, Sep 18, 2017 at 11:42 AM, Dan Dillon wrote:
> What is the output of strip --help (or equiva
Hi, Michael,
All the ".cc" files need to be compiled to make your package work. Putting
them in the inst/include folder is not enough.
I made some quick changes in your package and please check the attachment.
Best,
Qiang Kou
On Wed, Aug 2, 2017 at 11:22 AM, Michaël BENESTY wr
t; Rcpp-devel@lists.r-forge.r-project.org
> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
>
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Please share your code.
KK
On 14 Jul 2017 12:31 a.m., "Johannes Signer" wrote:
> Dear Rcpp-Developers,
>
> I have an R-package with some Rcpp code. If I build and install the
> package (`devtools::build()` and `devtools::install()`) everything works
> fine.
>
> But, when I check the package for
In the ge-model.cpp, from line 216 to line 225, the *_rand* will be
initialized there.
These lines of code are part of the "initialize" function.
If you don't call the "initialize", the array won't be initialized and
cause a memory error in deconstructor.
Can we discuss off the list?
This reall
l as a C++ script even in our current system.
>
> I still wonder why this ge-r.cpp works in the old system, but I will ask
> this to the maintainer of our system.
> I have learned a lot from your suggestion.
>
> Thanks again!
>
> Best,
>
> Takeshi
>
>
> On 2017/07
th.
>
> The obs.Os01g0182600_g1.nc file is a file containing environmental
> fluctuation data.
>
> Best,
>
> Takeshi
>
> On 2017/07/04 5:40, Qiang Kou wrote:
>
> Hi, I am afraid the example you provided is not a reproducible example.
>
> First, we don't know the
; Rcpp::Named("out_res_dev")=Model.out_res_dev
> );
>
> cout << "List constructed.\n";
>
>fflush(stdout);
>
> return (out);
> }
>
> catch(char* e) {
> cout << e << "\n";
> exit(EXIT_FAILURE);
> }
> catch(...) {
> cout << "Error\n";
> exit(EXIT_FAILURE);
> }
> }
>
>
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Hi, Xiaojie,
Please provide a reproducible example. I am afraid it is very hard to help
with just a small code snippet.
Best,
Qiang Kou
On Tue, Jun 6, 2017 at 6:22 PM, Xiaojie Qiu wrote:
> Hi Rcpp friends,
>
> I have a question regarding to parallel my rcpp code for KNN querying.
%d rows \\n", i, df.nrow());
> for(int k=0; k < df.nrow(); k++){
> // Rcpp::GenericVector v = df[k];
> // Rprintf("typeof v = %s \\n", typeid(v).name());
> // Rprintf(" row [%d] = %s \\n", k, df[k]);
> }
> }
> return splitted;
> '
> rm(fun_4)
> fun_4 <- cxxfunction(sig=signature(env="environment"), body = src_4,
> plugin = "Rcpp")
> ret_4 <- fun_4(PLAYGROUND)
>
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t; Have I mistakenly set something here that is causing this problem?
>
> I tried putting the 'CXX=g++' in the `Makevars` but I had previously read
> that it is ignored by the internal R `Makefile` so naturally it provided no
> help.
>
> Regards,
> Charles
> Rcpp-devel mailing list
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>
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School of Informatics and Computing, Indiana University
_
isNull())
>
> (Untested, but should work)
>
> Dirk
>
> --
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Hi, Qin,
I am afraid the problem you met is Windows-specific. On OSX and Linux, I got
> error_with_unicode(enc2utf8("测试"))
*Error: 测试*
Personally I am not sure we can fix this on C++ side.
Best wishes,
KK
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hanks!
>>
>> Tiago
>>
>>
>>
>
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q...@u
_t index = buffer.find_last_of(s);
>if (index != std::string::npos) buffer.replace(index, strlen(s), news);
>valid = false;
>return *this;
> }
> ---
> > rcpp_string()
> replace_all()
> AabCDabCDA
>
> replace_first()
> AabCDABCDA
>
&
'%s')", s, news);
> > if (is_na()) return *this;
> > setBuffer();
> > //size_t index = buffer.find_last_of(s);
> > size_t index = buffer.find_last_of(s) - (strlen(s)-1);
> > Rcout << "A" << index << "\n";
> > if (index != st
ind_last_of(s);
> size_t index = buffer.find_last_of(s) - (strlen(s)-1);
> Rcout << "A" << index << "\n";
> if (index != std::string::npos) buffer.replace(index, strlen(s), news);
> valid = false;
> return *this;
&g
ally accomplishes.
>
> So I wonder if it’s possible to either specify c++ compiler in sourceCpp
> or somehow add the ‘-fopenmp’ flag
>
>
> Thanks in advance,
> Yue
>
>
>
> _______
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> Rcp
1.1.0 R6_2.1.1tools_3.2.3 curl_0.9.5
> [5] memoise_0.2.1 git2r_0.13.1digest_0.6.8devtools_1.10.0
>
>
> I'm glad I found MLPACK while looking at your GitHub. That has neat
> features, which I'll try out. We have a big data workgroup here and
> I'll look
have not actually been properly materialized when we attempt to
> perform the subset?
>
> But then, a simple test case with `x[y - 1]` with `x` and `y` both
> being integer vectors seems to work just fine. So I am a bit confused.
>
> On Fri, Jan 29, 2016 at 3:16 PM, Dirk Eddelbuett
will try to reuse it.
This led to a segfault in this case, which I don't know why.
Dirk and Kevin, do you have any thoughts on it?
Best wishes,
KK
[1]
https://github.com/thirdwing/Rcpp/commit/216c5220bcb84778a656b3496d0f1803b973ef61
On Fri, Jan 29, 2016 at 3:00 PM, Qiang Kou wrote:
>
list
> Rcpp-devel@lists.r-forge.r-project.org
> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
>
--
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gt;
>> Skype: RMkrug
>>
>> PGP: 0x0F52F982
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> Youssef
>
> Phd Student at Aix-Marseille University, France
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be a problem when in R I do:
> >>>>
> >>>>> mat <- matrix(0, nrow=nrow, ncol=ncol)
> >>>>
> >>>>
> >>>> Questions:
> >>>> 1. why is the behaviour different between R and Rcpp in the allocation
> >>>> of a matrix?
> >>>> 2. In a 64 bits machine, what is actually the maximum allowed length
> >>>> of a vector/matrix? does the length of a vector/matrix need to be
> >>>> represented by an int?
> >>>>
> >>>> Thanks a lot and best regards,
> >>>> Alessandro
> >>>>
> >>>
> >>
> >>
> >>
> >> --
> >> Alessandro Mammana, PhD Student
> >> Max Planck Institute for Molecular Genetics
> >> Ihnestraße 63-73
> >> D-14195 Berlin, Germany
> >
> >
> >
> > --
> > Alessandro Mammana, PhD Student
> > Max Planck Institute for Molecular Genetics
> > Ihnestraße 63-73
> > D-14195 Berlin, Germany
>
>
>
> --
> Alessandro Mammana, PhD Student
> Max Planck Institute for Molecular Genetics
> Ihnestraße 63-73
> D-14195 Berlin, Germany
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On Sat, Oct 31, 2015 at 3:08 PM, Alessandro Mammana
wrote:
> Dear All,
> When creating a large matrix with the follwing code:
>
> #include
> // [[Rcpp::export]]
> Rcpp::IntegerMatrix makeMat(int nrow, int ncol){
> Rcpp::IntegerMatrix mat(nrow, ncol);
> return mat;
> }
>
> I get t
Hall Room 102
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our
> packages.
>
> Dirk
>
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K to mix C++ and f77.
More people can give more help if you are willing to share the source.
Best wishes,
KK
>
>
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project,
> where I omit the GSL (and RcppGSL) dependency (I could attach it but I
> don't know if it is allowed).
>
> Sorry if this question might sound silly (and it does to me), but is there
> any known issue or incompatibility with RcppGSL and wrap/as?
>
>
> Thanks,
>
.r-forge.r-project.org
> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
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As far as I know it is possible to run OpenSolaris.
Let me check.
On 2 April 2015 at 16:31, Romain Francois wrote:
| Would be useful to have a solaris machine on aws or whatever with R all
these toils installed.
|
| I once had a virtual machine set up thanks to martyn but the user
experience of v
gt;
> #include
>
> // [[Rcpp::depends(RcppArmadillo)]]
> // [[Rcpp::interfaces(cpp)]]
>
> using namespace Rcpp;
>
> //[[Rcpp::export]]
> List rcpp_hello_world() {
>
> CharacterVector x = CharacterVector::create( "foo", "bar" ) ;
>
t; | Rcpp-devel mailing list
> | Rcpp-devel@lists.r-forge.r-project.org
> | https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
>
> --
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> ___________
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))
[1] FALSE
> seteq1(c("a","b"), c("a","b","k"))
[1] FALSE
> seteq1(c("a","b"), c("a","b","b"))
[1] TRUE
[1]
https://github.com/RcppCore/Rcpp/blob/master/inst/include/Rcpp/sugar/functio
gt;
> >> seteq1(c("a","b"), c("a","b"))
> > [1] FALSE
> >
> >> seteq1(c(1,2,3), c(3,2))
> > [1] FALSE
> >
> >> seteq1(c("a","b"), c("a","b","k"))
> > [1]
ors from 0 contexts (suppressed: 0 from 0)
> edd@max:/tmp$
>
> By overwriting d the memory is lost for good, and valgrind notices as you;d
> think it would.
>
> Dirk
>
> --
> http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org
> __
)
> [1] FALSE
> R> isItNan(3L)
> [1] FALSE
> R>
>
> There are (better) alternatives in the Rcpp sources, but some of the
> behaviour is subtle. Kevin once wrote a great answer at StackOverflow:
>
>
> http://stackoverflow.com/
t; |
> | Thanks
> |
> | Devin
> |
> |
> |
> |
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> |
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> |
> |
>
>
> *std::cout << "Domain Error occurred!" << std::endl;*
>
> *}*
>
> *return 0;*
>
> *} *
>
>
>
> This seems to be wrong, since it still causes an abortion error in RStudio.
>
>
>
> I appreciate any input
-
> ### Main R code
>
> rm(list=ls(all=TRUE))
>
> library(Rcpp)
> library(RcppGSL)
> library(RcppParallel)
> library(RcppArmadillo)
> setwd('U:/testParallel')
>
> sourceCpp("test.cpp")
>
> asd = matrix(runif(1000), ncol = 100)
> contr
gt;> Purdue University
>>
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>
>
>
> --
> http://w
headers,
> but my head is too small for this yet.
>
> Any ideas that could help me?
>
> Dave Silkworth
>
>
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ns (0.028s) is 33-time faster
than kmeans in R (0.947s). However, we should note that R returns more
information than the clustering result and there are much more checking
functions in R.
There is an important problem in MLPACK: it uses *size_t* type heavily.
There will be problems in wrapping
em calling the package in RStudio.
>
> Thanks!
> Jing
>
>
>
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q
Understood!
I will contact Ryan and modify the package in the weekend.
Best,
KK
On Wed, Jun 11, 2014 at 9:28 AM, Dirk Eddelbuettel wrote:
>
> On 11 June 2014 at 08:50, Qiang Kou wrote:
> | Thanks for the opinions!
>
> As they say, "talk is cheap" so I dispense it fr
Thanks for the opinions!
On Wed, Jun 11, 2014 at 7:38 AM, Dirk Eddelbuettel wrote:
> And smart how you just added the little bit from Boost
> we don't have in BH (program_options).
>
As far as I know all parts in BH package are headers-only, and
"program_options" is required by MLPACK to handle
Armadillo, there
is not much work as I have seen.
Please send pull request If interested in contributing code or testing.
Best,
KK
[1] https://github.com/thirdwing/RcppMLPACK.git
On Sun, Apr 6, 2014 at 1:08 AM, Dirk Eddelbuettel wrote:
>
> James, Qiang,
>
> On 5 April 2014 at 23:3
he
> library
>
> Does anyone have any idea how can I do that automatically?
>
> Thank you!
>
> Best,
>
> KK
>
> --
> Qiang Kou
> q...@umail.iu.edu
> School of Informatics and Computing, Indiana University
>
> ___
>
you!
Best,
KK
--
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q...@umail.iu.edu
School of Informatics and Computing, Indiana University
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I will contact them to listen their opinions and try to figure out the
bigger picture.
Best,
KK
On Sun, Apr 6, 2014 at 1:08 AM, Dirk Eddelbuettel wrote:
>
> James, Qiang,
>
> On 5 April 2014 at 23:33, Qiang Kou wrote:
> | Hi, I think we can try to start this in the summer, si
l mailing list
>> Rcpp-devel@lists.r-forge.r-project.org
>> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
>>
>
>
>
> --
> James Li *|* Ph.D. Candidate *|* http://jamesyili.com/
> Dept. of Statistical Science *|* Cornell University
>
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