Re: [Rdkit-devel] Install RDKit

2015-01-30 Thread Soren Wacker
From: Riccardo Vianello [riccardo.viane...@gmail.com] Sent: Friday, January 30, 2015 4:44 AM To: Soren Wacker Cc: Greg Landrum; RDKit Developers List Subject: Re: [Rdkit-devel] Install RDKit Hi Soren, until recently, boost packages were not provided by the

Re: [Rdkit-devel] Install RDKit

2015-01-30 Thread Soren Wacker
From: Riccardo Vianello [riccardo.viane...@gmail.com] Sent: Friday, January 30, 2015 4:44 AM To: Soren Wacker Cc: Greg Landrum; RDKit Developers List Subject: Re: [Rdkit-devel] Install RDKit Hi Soren, until recently, boost packages were not provided by the anaconda

Re: [Rdkit-devel] Install RDKit

2015-01-30 Thread Riccardo Vianello
Hi Soren, until recently, boost packages were not provided by the anaconda distribution, and this is basically the reason we provide recipes to build boost too. When a few weeks ago boost packages targeting version 1.57.0 have been added to the conda default channels (for linux and windows at leas

Re: [Rdkit-devel] Install RDKit

2015-01-29 Thread Greg Landrum
I believe you need to install the version of the rdkit you just built in your conda environment with conda install and make sure that environment is active. It looks like it's finding a different build. You can confirm this by doing: python -c 'import rdkit;print(rdkit.__file__)' and looking at t

Re: [Rdkit-devel] Install RDKit

2015-01-29 Thread Soren Wacker
I tried that. I was able to compile rdkit, apparently just by typing conda build boost conda build rdkit but, when I use that build I get from rdkit import rdBase > ImportError: libboost_python.so.1.54.0: cannot open shared object file: No > such file or directory strange thing is, that anac

Re: [Rdkit-devel] Install RDKit

2015-01-29 Thread Soren Wacker
[greg.land...@gmail.com] Sent: Wednesday, January 28, 2015 10:32 PM To: Soren Wacker Cc: RDKit Developers List Subject: Re: [Rdkit-devel] Install RDKit Hi Soren, On Thu, Jan 29, 2015 at 2:03 AM, Soren Wacker mailto:swac...@ucalgary.ca>> wrote: I would highly appreciate a conda install rdki

Re: [Rdkit-devel] Install RDKit

2015-01-28 Thread Greg Landrum
Hi Soren, On Thu, Jan 29, 2015 at 2:03 AM, Soren Wacker wrote: > > I would highly appreciate a > conda install rdkit > > way of doing it, but that is probably not so easy to realize. > It wasn't easy to realize but fortunately Riccardo has already done the work: https://github.com/rdkit/conda-r

Re: [Rdkit-devel] Install RDKit

2015-01-28 Thread Soren Wacker
From: Paul Emsley [pems...@mrc-lmb.cam.ac.uk] Sent: Wednesday, January 28, 2015 3:13 PM To: rdkit-devel@lists.sourceforge.net Subject: Re: [Rdkit-devel] Install RDKit On 28/01/15 20:14, Soren Wacker wrote: Hi, I want to install RDKit to a certain directory. However, when I am in the source

Re: [Rdkit-devel] Install RDKit

2015-01-28 Thread Paul Emsley
On 28/01/15 20:14, Soren Wacker wrote: Hi, I want to install RDKit to a certain directory. However, when I am in the source directory and do md build cd build cmake .. -DCMAKE_INSTALL_PREFIX=/home/.../Programme/RDKit make make install RDKit is build and installed, but not to the directory. Wh

Re: [Rdkit-devel] Install RDKit

2015-01-28 Thread David Hall
my guess: -DRDK_INSTALL_INTREE=OFF -David On Wed, Jan 28, 2015 at 3:14 PM, Soren Wacker wrote: > Hi, > > I want to install RDKit to a certain directory. > However, when I am in the source directory and do > > md build > cd build > cmake .. -DCMAKE_INSTALL_PREFIX=/home/.../Programme/RDKit > >