Re: [Rdkit-discuss] PGSQL build with cmake and system inchi

2016-08-08 Thread Gianluca Sforna
On Mon, Aug 8, 2016 at 11:20 AM, Greg Landrum wrote: > As Paolo points out, this really just integrates the cartridge tests into > the rest of the test suite. Ok, so basically I was not seeing this before because I was not running it with the old style build > > @Gianluca: If you need to be able

Re: [Rdkit-discuss] PGSQL build with cmake and system inchi

2016-08-08 Thread Greg Landrum
As Paolo points out, this really just integrates the cartridge tests into the rest of the test suite. @Gianluca: If you need to be able to build the cartridge and run the RDKit test suite without running the cartridge tests, it would be easy for us to add an RDK_RUN_PGSQL_TESTS option that default

Re: [Rdkit-discuss] PGSQL build with cmake and system inchi

2016-08-08 Thread Paolo Tosco
Hi Gianluca, the README ("After building the RDKit, carry out the following steps" section) briefly explains what needs to be done to install the cartridge and get the PgSQL test to work. The user which will be running the test needs to have administrator privileges on PostgresSQL as it will ne

Re: [Rdkit-discuss] PGSQL build with cmake and system inchi

2016-08-06 Thread Gianluca Sforna
Thanks for the patch Paolo. Is test 97 new? It seems it wants to use the Postgres server and fails, I am afraid it is not easy to have it working at build time. On Fri, Aug 5, 2016 at 11:45 AM, Gianluca Sforna wrote: > Anyone ever tested this combo? > > I am currently getting: > > /usr/bin/c++

[Rdkit-discuss] PGSQL build with cmake and system inchi

2016-08-05 Thread Gianluca Sforna
Anyone ever tested this combo? I am currently getting: /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -m