Re: [Rdkit-discuss] Drawing options: noCarbonSymbols = False

2021-03-05 Thread Thomas
Thank you, I was looking for more readable images: for example in OpenBabel "the default is to draw all hetero atoms and terminal C explicitly, together with their attched hydrogens." Basically I'm approaching rdkit right now, so I was wondering if there was something wrong in my approach. "Not ava

Re: [Rdkit-discuss] Drawing options: noCarbonSymbols = False

2021-03-03 Thread Greg Landrum
Hi Thomas, noCarbonSymbols was an option for the old drawing code and is not currently available in the new drawing code since it didn't seem to be particularly useful. We can maybe provide suggestions if you provide an example image that you're getting and explain what you'd like to change about

Re: [Rdkit-discuss] Drawing options: noCarbonSymbols = False

2021-03-03 Thread Omar H94
Hi Thomas, I don't know if there's a direct working option to show the carbons symbol. You might consider showing the symbols manually: from rdkit import Chem from IPython.display import SVG from rdkit.Chem.Draw import IPythonConsole, rdMolDraw2D mol = Chem.MolFromSmiles('c1cccnc1OCCCNC(=N)N') d