Re: [Rdkit-discuss] Unable to build RDKit C# wrapper due to boost libraries

2019-05-03 Thread Paolo Tosco
Dear Esther, you should not set BOOST_INCLUDEDIR, BOOST_ROOT, BOOST_LIBRARYDIR as environment variables, but as CMake parameters, i.e. something like: cmake -S %RDBASE% -B "%RDBASE%\build" -DRDK_BUILD_SWIG_CSHARP_WRAPPER=ON -DBOOST_ROOT=C:\Users\e.barlow-smith\AppData\Local\boost_1_67_0\boost

Re: [Rdkit-discuss] Unable to build RDKit C# wrapper due to boost libraries

2019-05-03 Thread Esther Barlow-Smith
Hi Paolo, I tried again with your correction but I got the same error that the boost libraries could not be found. Thanks, Esther From: Paolo Tosco Sent: 03 May 2019 09:43 To: Esther Barlow-Smith; rdkit-discuss@lists.sourceforge.net Subject: Re: [Rdkit-discuss] U

Re: [Rdkit-discuss] Unable to build RDKit C# wrapper due to boost libraries

2019-05-03 Thread Paolo Tosco
Hi Esther, below I detail all steps to download and successfully build RDKit Release 2019.03.1 with C# wrappers on Windows in a conda environment starting from a fresh Miniconda install done in C:\a3. The build relies on conda Boost. C:\Users\paolo>C:\a3\condabin\activate.bat conda.bat ac

Re: [Rdkit-discuss] Unable to build RDKit C# wrapper due to boost libraries

2019-05-03 Thread Esther Barlow-Smith
Hi Paolo, I repeated the steps and it worked, thank you so much for your help I really appreciate it! Esther From: Paolo Tosco Sent: 03 May 2019 13:14 To: Esther Barlow-Smith Cc: rdkit-discuss@lists.sourceforge.net Subject: Re: [Rdkit-discuss] Unable to build RDKi

[Rdkit-discuss] Rdkit setup

2019-05-03 Thread Yifei Xing
Hello All, When trying to setup rdkit in debian 9, I run into the following error: /usr/bin/ld: /usr/lib/python3.5/config-3.5m-x86_64-linux-gnu/libpython3.5m.a(exceptions.o): relocation R_X86_64_PC32 against symbol `PyExc_BaseException' can not be used when making a shared object; recompile with -