[Rdkit-discuss] 2020 RDKit UGM Registration open

2020-04-29 Thread Greg Landrum
Dear all This year's RDKit User Group Meeting will take place from 6-8 October in Berlin, Germany and is being hosted by Djork-Arné Clevert and Floriane Montanari at Bayer AG, Digital Technologies. Registration for the RDKit UGM is free:

[Rdkit-discuss] Atom contributions for rdShapeHelpers.ShapeProtrudeDist

2020-04-29 Thread Tim Dudgeon
I'm using the rdShapeHelpers.ShapeProtrudeDist() method to generate a protrude distance score like this: protrude_dist = rdShapeHelpers.ShapeProtrudeDist(ref_mol, query_mol,allowReordering=False) Is it possible to determine the contributions that each atom of a molecule makes to the score?

[Rdkit-discuss] [RDKit-discuss] rdchem.ResonanceMolSupplier cause segfault on some inputs

2020-04-29 Thread victor viterbo via Rdkit-discuss
Dear RDKit community, I am using rdkit 2019.09.3 on Ubuntu 20.04 focal, and for certain inputs like the one specified below I get a Segmentation Fault. Here is a minimal script to reproduce the error as well as the two sdf that caused the error. from rdkit import Chem from rdkit.Chem

Re: [Rdkit-discuss] [RDKit-discuss] rdchem.ResonanceMolSupplier cause segfault on some inputs

2020-04-29 Thread Paolo Tosco
Dear Victor, I have tested this on the latest RDKit trunk code and it does not segfault; I believe this is the same bug described here: https://github.com/rdkit/rdkit/issues/3048 and it is already fixed. Cheers, p. On 29/04/2020 17:24, victor viterbo via Rdkit-discuss wrote: RDKit