Author: bugman
Date: Tue Nov 25 16:56:10 2014
New Revision: 26721
URL: http://svn.gna.org/viewcvs/relax?rev=26721&view=rev
Log:
Created two new frame order system tests for the torsionless pseudo-ellipse PDB
representation file.
This is the two PDB files from the frame_order.pdb_model user funct
Author: bugman
Date: Tue Nov 25 19:39:46 2014
New Revision: 26722
URL: http://svn.gna.org/viewcvs/relax?rev=26722&view=rev
Log:
Created two new frame order system tests for the double rotor PDB
representation file.
This is the two PDB files from the frame_order.pdb_model user function. The
two
Author: bugman
Date: Tue Nov 25 20:13:17 2014
New Revision: 26723
URL: http://svn.gna.org/viewcvs/relax?rev=26723&view=rev
Log:
Merged revisions 26708,26710 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r26708 | bugman | 2014-11-24 13:37:15 +0100 (Mon, 24 Nov 2014) |
Author: bugman
Date: Tue Nov 25 20:14:44 2014
New Revision: 26724
URL: http://svn.gna.org/viewcvs/relax?rev=26724&view=rev
Log:
Merged revisions 26667,26670,26679,26681,26708,26710 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r26667 | bugman | 2014-11-20 15:58:14 +01
Author: bugman
Date: Wed Nov 26 09:06:57 2014
New Revision: 26725
URL: http://svn.gna.org/viewcvs/relax?rev=26725&view=rev
Log:
More redirects for the relax HTML manual at
http://www.nmr-relax.com/manual/index.html.
This is required as the latex2html program used to build the manual has been
mo
Author: bugman
Date: Wed Nov 26 09:20:20 2014
New Revision: 26726
URL: http://svn.gna.org/viewcvs/relax?rev=26726&view=rev
Log:
More redirects for the relax HTML manual at
http://www.nmr-relax.com/manual/index.html.
This is required as the latex2html program used to build the manual has been
mo
Author: bugman
Date: Wed Nov 26 09:49:16 2014
New Revision: 26727
URL: http://svn.gna.org/viewcvs/relax?rev=26727&view=rev
Log:
Fixes for broken MOLMOL links.
The original site http://hugin.ethz.ch/wuthrich/software/molmol/ is now a dead
link. Instead the
link http://sourceforge.net/projects/mo
Author: bugman
Date: Wed Nov 26 09:55:19 2014
New Revision: 26728
URL: http://svn.gna.org/viewcvs/relax?rev=26728&view=rev
Log:
Fixes for the http://download.gna.org/relax/ link.
This affects the menu http://www.nmr-relax.com/menu.html used on all the main
pages at
http://www.nmr-relax.com. The
Author: bugman
Date: Wed Nov 26 09:56:23 2014
New Revision: 26729
URL: http://svn.gna.org/viewcvs/relax?rev=26729&view=rev
Log: (empty)
Modified:
website/features.html
website/index.html
Modified: website/features.html
URL:
http://svn.gna.org/viewcvs/relax/website/features.html?rev=2672
Author: bugman
Date: Wed Nov 26 09:58:27 2014
New Revision: 26730
URL: http://svn.gna.org/viewcvs/relax?rev=26730&view=rev
Log:
Fix for the missing trailing '/' in the
http://plasma-gate.weizmann.ac.il/Grace/ link.
This affects http://www.nmr-relax.com/index.html and
http://www.nmr-relax.com/fe
Author: bugman
Date: Wed Nov 26 10:02:45 2014
New Revision: 26731
URL: http://svn.gna.org/viewcvs/relax?rev=26731&view=rev
Log:
Fix for the LinuxLinks logo at http://www.nmr-relax.com/links.html.
The tag was using the wrong file name. This was detected by the W3C link
checker
(http://validator
Author: bugman
Date: Wed Nov 26 10:08:19 2014
New Revision: 26732
URL: http://svn.gna.org/viewcvs/relax?rev=26732&view=rev
Log:
Updated the archive.today links from the older archive.is.
This is for http://www.nmr-relax.com/links.html. The website has changed name.
And the relax links
are now
Author: bugman
Date: Wed Nov 26 10:11:54 2014
New Revision: 26733
URL: http://svn.gna.org/viewcvs/relax?rev=26733&view=rev
Log:
Added the BMRB logo as the bmrblib logo for now.
This is so that http://www.nmr-relax.com/links.html points to an existing file
for the bmrblib logo.
Added:
websi
Author: bugman
Date: Wed Nov 26 10:13:21 2014
New Revision: 26734
URL: http://svn.gna.org/viewcvs/relax?rev=26734&view=rev
Log:
Fixes for the menu links for archive.today at
http://www.nmr-relax.com/links.html.
Modified:
website/links.html
Modified: website/links.html
URL:
http://svn.gna.
Author: bugman
Date: Wed Nov 26 10:21:05 2014
New Revision: 26735
URL: http://svn.gna.org/viewcvs/relax?rev=26735&view=rev
Log:
Fix for the OpenHUB link at http://www.nmr-relax.com/links.html.
This is for the basic statistics widget at
https://www.openhub.net/p/633408/widgets/project_basic_stats.
Author: bugman
Date: Wed Nov 26 10:22:42 2014
New Revision: 26736
URL: http://svn.gna.org/viewcvs/relax?rev=26736&view=rev
Log:
Fix for the NESSY link at http://www.nmr-relax.com/links.html.
The link required a trailing '/' to avoid a redirect. This was identified by
the W3C link checker
(http:
Author: bugman
Date: Wed Nov 26 10:24:17 2014
New Revision: 26737
URL: http://svn.gna.org/viewcvs/relax?rev=26737&view=rev
Log:
Fixes for all of the http://www.mail-archive.com links at
http://www.nmr-relax.com/links.html.
The 'www' part is required to avoid a redirect. This was identified by t
Author: bugman
Date: Wed Nov 26 10:25:28 2014
New Revision: 26738
URL: http://svn.gna.org/viewcvs/relax?rev=26738&view=rev
Log:
Fixes for the http://www.linuxlinks.com links at
http://www.nmr-relax.com/links.html.
The 'www' part of the URL is required to avoid a redirect. This was identified
b
Author: bugman
Date: Wed Nov 26 10:27:19 2014
New Revision: 26739
URL: http://svn.gna.org/viewcvs/relax?rev=26739&view=rev
Log:
Replacement of a Bruker link redirect at http://www.nmr-relax.com/links.html.
The original link is now a redirect, so the relax webpage has been updated to
match. This
tudy-Of-The-Model-Free-Analysis-Of-Nmr-Relaxation-Data/Edward-DAuvergne/e/9783639057621
This was identified by the W3C link checker (http://validator.w3.org/checklink).
Modified:
website/features.html
Modified: website/features.html
URL:
http://svn.gna.org/viewcvs/relax/website/features.html
Author: bugman
Date: Wed Nov 26 10:37:51 2014
New Revision: 26741
URL: http://svn.gna.org/viewcvs/relax?rev=26741&view=rev
Log:
Redirect fix for the http://www.python.org links at http://www.nmr-relax.com/.
The 'www' part is required to avoid a redirect. This was identified by the W3C
link chec
Author: bugman
Date: Wed Nov 26 10:39:16 2014
New Revision: 26742
URL: http://svn.gna.org/viewcvs/relax?rev=26742&view=rev
Log:
Updated the Homebrew link at http://www.nmr-relax.com/download.html.
The new link was identified by the W3C link checker
(http://validator.w3.org/checklink).
Modified
Author: bugman
Date: Wed Nov 26 10:40:22 2014
New Revision: 26743
URL: http://svn.gna.org/viewcvs/relax?rev=26743&view=rev
Log:
Updated the numpy links at http://www.nmr-relax.com/download.html.
The new link was identified by the W3C link checker
(http://validator.w3.org/checklink).
Modified:
Author: bugman
Date: Wed Nov 26 10:41:31 2014
New Revision: 26744
URL: http://svn.gna.org/viewcvs/relax?rev=26744&view=rev
Log:
Removed an old wxPython link from http://www.nmr-relax.com/download.html.
Modified:
website/download.html
Modified: website/download.html
URL:
http://svn.gna.org/
Author: bugman
Date: Wed Nov 26 10:42:51 2014
New Revision: 26745
URL: http://svn.gna.org/viewcvs/relax?rev=26745&view=rev
Log:
Fix for the http://www.nmr-relax.com/windows_devel.html#MSVS_probs link at
http://www.nmr-relax.com/download.html.
This was identified by the W3C link checker (http://v
Author: bugman
Date: Wed Nov 26 11:12:30 2014
New Revision: 26746
URL: http://svn.gna.org/viewcvs/relax?rev=26746&view=rev
Log:
Fixes for the links at the bottom of all HTML manual pages.
This is for the automatically generated documentation at
http://www.nmr-relax.com/manual/index.html,
created
Author: bugman
Date: Wed Nov 26 11:21:53 2014
New Revision: 26747
URL: http://svn.gna.org/viewcvs/relax?rev=26747&view=rev
Log:
Removed the repository backup file text from the relax manual.
This is for
http://www.nmr-relax.com/manual/Latest_sources_the_relax_repositories.html.
The gzipped
rep
Author: bugman
Date: Wed Nov 26 11:46:00 2014
New Revision: 26748
URL: http://svn.gna.org/viewcvs/relax?rev=26748&view=rev
Log:
Fixes for all of the footer links at http://www.nmr-relax.com/manual/index.html.
These problems were identified by the W3C link checker
(http://validator.w3.org/checkli
Author: bugman
Date: Wed Nov 26 13:30:33 2014
New Revision: 26749
URL: http://svn.gna.org/viewcvs/relax?rev=26749&view=rev
Log:
Updated the Google search links and javascript at
http://www.nmr-relax.com/communication.html.
The problems were identified by the W3C link checker
(http://validator.w
Author: bugman
Date: Wed Nov 26 13:42:42 2014
New Revision: 26750
URL: http://svn.gna.org/viewcvs/relax?rev=26750&view=rev
Log:
Converted the "Development platform setup" menu entry into a collapsible entry.
This is for all pages at http://www.nmr-relax.com.
Modified:
website/menu.html
Mod
Author: bugman
Date: Wed Nov 26 13:46:46 2014
New Revision: 26751
URL: http://svn.gna.org/viewcvs/relax?rev=26751&view=rev
Log:
Fix for a dead CTAN link at http://www.nmr-relax.com/windows_devel.html.
This was identified by the W3C link checker (http://validator.w3.org/checklink).
Modified:
Author: bugman
Date: Wed Nov 26 13:48:11 2014
New Revision: 26752
URL: http://svn.gna.org/viewcvs/relax?rev=26752&view=rev
Log:
Fix for the http://www.nmr-relax.com/manual/The_SCons_build_system.html link.
This is for the webpage http://www.nmr-relax.com/windows_devel.html. This was
identified
Author: bugman
Date: Wed Nov 26 13:50:18 2014
New Revision: 26753
URL: http://svn.gna.org/viewcvs/relax?rev=26753&view=rev
Log:
Converted a redirect to a direct link at
http://www.nmr-relax.com/windows_devel.html.
This is the link for the express edition of MS Visual Studio. This was
identifie
Author: bugman
Date: Wed Nov 26 13:51:22 2014
New Revision: 26754
URL: http://svn.gna.org/viewcvs/relax?rev=26754&view=rev
Log:
Converted the SlikSVN link to a direct link at
http://www.nmr-relax.com/windows_devel.html.
This was identified by the W3C link checker (http://validator.w3.org/checkli
Author: bugman
Date: Wed Nov 26 13:53:06 2014
New Revision: 26755
URL: http://svn.gna.org/viewcvs/relax?rev=26755&view=rev
Log:
Fix for the dead ICMRBS 2006 link at http://www.nmr-relax.com/events.html.
Modified:
website/events.html
Modified: website/events.html
URL:
http://svn.gna.org/vie
Author: bugman
Date: Wed Nov 26 13:58:22 2014
New Revision: 26756
URL: http://svn.gna.org/viewcvs/relax?rev=26756&view=rev
Log:
Fix for the Mail Archive logo link at http://www.nmr-relax.com/links.html.
This was identified by the W3C link checker
(http://validator.w3.org/checklink). The link us
Author: bugman
Date: Wed Nov 26 14:00:05 2014
New Revision: 26757
URL: http://svn.gna.org/viewcvs/relax?rev=26757&view=rev
Log:
Fix for the Pro-linux.de logo link at http://www.nmr-relax.com/links.html.
The dead link was identified by the W3C link checker
(http://validator.w3.org/checklink).
M
Author: bugman
Date: Wed Nov 26 14:01:02 2014
New Revision: 26758
URL: http://svn.gna.org/viewcvs/relax?rev=26758&view=rev
Log:
Converted a Mail Archive redirect to a direct link at
http://www.nmr-relax.com/links.html.
This was identified by the W3C link checker (http://validator.w3.org/checklin
Author: bugman
Date: Wed Nov 26 14:05:00 2014
New Revision: 26759
URL: http://svn.gna.org/viewcvs/relax?rev=26759&view=rev
Log:
Fixes for all of the dispersion model HTML manual links.
This is for http://www.nmr-relax.com/analyses/relaxation_dispersion.html. The
problems were
identified by the
Author: bugman
Date: Wed Nov 26 14:22:47 2014
New Revision: 26760
URL: http://svn.gna.org/viewcvs/relax?rev=26760&view=rev
Log:
Updated all of the http://www.nmr-relax.com/manual/ links in the lib.dispersion
package.
This is for all of the individual model pages in the HTML manual.
Modified:
Author: bugman
Date: Wed Nov 26 14:25:08 2014
New Revision: 26761
URL: http://svn.gna.org/viewcvs/relax?rev=26761&view=rev
Log:
Fix for the "Development platform setup" collapsible side menu.
This is for all webpages at http://www.nmr-relax.com.
Modified:
website/menu.html
Modified: websit
Author: bugman
Date: Wed Nov 26 14:26:37 2014
New Revision: 26762
URL: http://svn.gna.org/viewcvs/relax?rev=26762&view=rev
Log:
Converted a Gna! news link to http://wiki.nmr-relax.com/Relax_3.1.0.
This is because the wiki release notes are much better for navigation.
Modified:
website/analy
Author: bugman
Date: Wed Nov 26 14:32:12 2014
New Revision: 26763
URL: http://svn.gna.org/viewcvs/relax?rev=26763&view=rev
Log:
Merged revisions 26746-26747,26760 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r26746 | bugman | 2014-11-26 11:12:30 +0100 (Wed, 26 Nov 20
Author: bugman
Date: Wed Nov 26 14:35:38 2014
New Revision: 26764
URL: http://svn.gna.org/viewcvs/relax?rev=26764&view=rev
Log:
Added relax scripts and PDB files which match the
Frame_order.test_test_pdb_model_* system tests.
These were used to construct and visually check the tests in a molecul
Author: bugman
Date: Wed Nov 26 15:44:28 2014
New Revision: 26765
URL: http://svn.gna.org/viewcvs/relax?rev=26765&view=rev
Log:
Added the type attribute for the Google gadget custom search
Protein-Dynamics-Model-free-Analysis-Relaxation/dp/3639057627";>Amazon.com,
http://www.barnesandnoble.com/w/protein-dynamics-a-study-of-the-model-free-analysis-of-nmr-relaxation-data-edward-dauvergne/1014058697?ean=9783639057621&itm=1&usri=9783639057621";>Barnes
& Nobel and m
Author: bugman
Date: Wed Nov 26 15:55:07 2014
New Revision: 26767
URL: http://svn.gna.org/viewcvs/relax?rev=26767&view=rev
Log:
Simplified all of the Frame_order.test_pdb_model_* system tests.
The atom, residue and 3D coordinate checking in all these methods has been
shifted into the common
chec
Author: bugman
Date: Wed Nov 26 18:35:06 2014
New Revision: 26768
URL: http://svn.gna.org/viewcvs/relax?rev=26768&view=rev
Log:
Improved the description for the relax_fit.select_model user function.
Modified:
trunk/user_functions/relax_fit.py
Modified: trunk/user_functions/relax_fit.py
URL:
Author: bugman
Date: Wed Nov 26 19:29:54 2014
New Revision: 26769
URL: http://svn.gna.org/viewcvs/relax?rev=26769&view=rev
Log:
A small code rearrangement to create the new target_functions.relax_fit_wrapper
module.
This follows from the idea at https://gna.org/task/?7415#comment6. The
*func_w
Author: bugman
Date: Wed Nov 26 19:42:20 2014
New Revision: 26770
URL: http://svn.gna.org/viewcvs/relax?rev=26770&view=rev
Log:
Shifted the C code Jacobian functions into the new
target_functions.relax_fit_wrapper module.
This shifts all of the relaxation curve-fitting C code access into the
tar
Author: bugman
Date: Thu Nov 27 09:45:09 2014
New Revision: 26771
URL: http://svn.gna.org/viewcvs/relax?rev=26771&view=rev
Log:
Updated the formula in the description of the relax_fit.select_model user
function.
Modified:
trunk/user_functions/relax_fit.py
Modified: trunk/user_functions/rel
Author: bugman
Date: Thu Nov 27 10:25:57 2014
New Revision: 26772
URL: http://svn.gna.org/viewcvs/relax?rev=26772&view=rev
Log:
Merged revisions 26768-26771 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r26768 | bugman | 2014-11-26 18:35:06 +0100 (Wed, 26 Nov 2014) |
Author: bugman
Date: Thu Nov 27 10:54:56 2014
New Revision: 26773
URL: http://svn.gna.org/viewcvs/relax?rev=26773&view=rev
Log:
Simplification for all of the Frame_order.test_pdb_model_* system tests.
The model setup in all of these tests has been merged into the common
setup_model() method. Th
Author: bugman
Date: Thu Nov 27 15:16:48 2014
New Revision: 26782
URL: http://svn.gna.org/viewcvs/relax?rev=26782&view=rev
Log:
Modified the printouts from the structure.write_pdb user function if models are
present.
Instead of printing out 'MODEL', 'ATOM, HETATM, TER' and 'ENDMDL' for each
mod
Author: bugman
Date: Thu Nov 27 15:23:05 2014
New Revision: 26783
URL: http://svn.gna.org/viewcvs/relax?rev=26783&view=rev
Log:
Merged revisions 26782 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r26782 | bugman | 2014-11-27 15:16:48 +0100 (Thu, 27 Nov 2014) | 8 line
Author: bugman
Date: Thu Nov 27 16:27:21 2014
New Revision: 26784
URL: http://svn.gna.org/viewcvs/relax?rev=26784&view=rev
Log:
Created an initial version of the Frame_order.test_simulate_rotor_z_axis system
test.
This is to check the frame_order.simulate user function rotor model along the
z-a
Author: bugman
Date: Thu Nov 27 17:56:25 2014
New Revision: 26789
URL: http://svn.gna.org/viewcvs/relax?rev=26789&view=rev
Log:
Fixes for the Frame_order.test_simulate_rotor_z_axis system test.
Now 6 atoms are being created at X, -X, Y, -Y, Z, and -Z, 100 Angstrom from the
origin. This is
requi
Author: bugman
Date: Thu Nov 27 19:11:38 2014
New Revision: 26791
URL: http://svn.gna.org/viewcvs/relax?rev=26791&view=rev
Log:
Added the synthetic saturation-recovery data in the form of Sparky peak lists
to the repository.
These files were created by Andras Boeszoermenyi . They are attached t
Author: bugman
Date: Thu Nov 27 19:32:58 2014
New Revision: 26792
URL: http://svn.gna.org/viewcvs/relax?rev=26792&view=rev
Log:
Merged revisions 26791 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r26791 | bugman | 2014-11-27 19:11:38 +0100 (Thu, 27 Nov 2014) | 11 lin
Author: bugman
Date: Thu Nov 27 19:33:41 2014
New Revision: 26793
URL: http://svn.gna.org/viewcvs/relax?rev=26793&view=rev
Log:
Merged revisions 26746-26747,26760,26768-26771,26782,26791 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r26746 | bugman | 2014-11-26 11:12:
Author: bugman
Date: Thu Nov 27 21:48:08 2014
New Revision: 26794
URL: http://svn.gna.org/viewcvs/relax?rev=26794&view=rev
Log:
Updated the target_functions package __all__ list to include the relax_fit*
modules.
Modified:
trunk/target_functions/__init__.py
Modified: trunk/target_functions
Author: bugman
Date: Thu Nov 27 21:50:50 2014
New Revision: 26795
URL: http://svn.gna.org/viewcvs/relax?rev=26795&view=rev
Log:
Modified the package __all__ list checking unit test to accept *.so C modules.
Modified:
trunk/test_suite/unit_tests/package_checking.py
Modified: trunk/test_suite
Author: bugman
Date: Fri Nov 28 08:50:00 2014
New Revision: 26796
URL: http://svn.gna.org/viewcvs/relax?rev=26796&view=rev
Log:
Fix for the Frame_order.test_pdb_model_free_rotor_xz_plane_tilt system test.
This was broken while implementing the Frame_order.test_simulate_rotor_z_axis
system test.
Author: bugman
Date: Fri Nov 28 08:55:30 2014
New Revision: 26797
URL: http://svn.gna.org/viewcvs/relax?rev=26797&view=rev
Log:
Created the Frame_order.test_simulate_free_rotor_z_axis system test.
This is to check the frame_order.simulate user function for the free rotor
model along the z-axis.
Author: bugman
Date: Fri Nov 28 09:34:02 2014
New Revision: 26798
URL: http://svn.gna.org/viewcvs/relax?rev=26798&view=rev
Log:
Bug fix for the pymol.view user function for when no PDB file exists.
The pymol.view user function would fail with an AttributeError when the
currently loaded data does
Author: bugman
Date: Fri Nov 28 09:35:55 2014
New Revision: 26799
URL: http://svn.gna.org/viewcvs/relax?rev=26799&view=rev
Log:
Merged revisions 26794-26795,26798 via svnmerge from
svn+ssh://bug...@svn.gna.org/svn/relax/trunk
r26794 | bugman | 2014-11-27 21:48:08 +0100 (Thu, 27 Nov 20
Author: bugman
Date: Fri Nov 28 12:15:34 2014
New Revision: 26800
URL: http://svn.gna.org/viewcvs/relax?rev=26800&view=rev
Log:
Created the Frame_order.test_simulate_iso_cone_z_axis system test.
This is to check the frame_order.simulate user function for the isotropic cone
model along the
z-axis
Author: bugman
Date: Fri Nov 28 12:17:42 2014
New Revision: 26801
URL: http://svn.gna.org/viewcvs/relax?rev=26801&view=rev
Log:
Created the Frame_order.test_simulate_iso_cone_free_rotor_z_axis system test.
This is to check the frame_order.simulate user function for the free rotor
isotropic cone
Author: bugman
Date: Fri Nov 28 12:20:00 2014
New Revision: 26802
URL: http://svn.gna.org/viewcvs/relax?rev=26802&view=rev
Log:
Created the Frame_order.test_simulate_iso_cone_torsionless_z_axis system test.
This is to check the frame_order.simulate user function for the torsionless
isotropic con
Author: bugman
Date: Fri Nov 28 15:36:21 2014
New Revision: 26809
URL: http://svn.gna.org/viewcvs/relax?rev=26809&view=rev
Log:
Created the Frame_order.test_simulate_pseudo_ellipse_z_axis system test.
This is to check the frame_order.simulate user function for the pseudo-ellipse
model along the
Author: bugman
Date: Fri Nov 28 19:03:16 2014
New Revision: 26810
URL: http://svn.gna.org/viewcvs/relax?rev=26810&view=rev
Log:
Removal of an unused import in the relax_fit_zooming_grid.py system test script.
Modified:
trunk/test_suite/system_tests/scripts/relax_fit_zooming_grid.py
Modified
0 +1,132 @@
+###
+# #
+# Copyright (C) 2004-2014 Edward d'Auvergne #
+# #
+# This
Author: bugman
Date: Sat Nov 29 09:48:13 2014
New Revision: 26820
URL: http://svn.gna.org/viewcvs/relax?rev=26820&view=rev
Log:
Added a copyright notice for Andras Boeszoermenyi for the newly added
saturation-recovery R1 script.
This change follows the discussion in the message
http://thread.gma
Author: bugman
Date: Sat Nov 29 09:55:57 2014
New Revision: 26821
URL: http://svn.gna.org/viewcvs/relax?rev=26821&view=rev
Log:
Modified the relax_fit_saturation_recovery.py script to work as a system test.
This is the script from Andras Boeszoermenyi .
The change follows from the discussion of
h
Author: bugman
Date: Sat Nov 29 09:56:49 2014
New Revision: 26822
URL: http://svn.gna.org/viewcvs/relax?rev=26822&view=rev
Log:
Reverted r26820 as this was incorrect.
The command used was:
svn merge -r26820:r26819 .
Modified:
trunk/test_suite/system_tests/scripts/relax_fit_zooming_grid.py
em_tests/scripts/relax_fit_saturation_recovery.py
Sat Nov 29 09:59:17 2014
@@ -1,6 +1,7 @@
###
# #
# Copyright (C) 2004-2014 E
Author: bugman
Date: Sat Nov 29 10:03:27 2014
New Revision: 26824
URL: http://svn.gna.org/viewcvs/relax?rev=26824&view=rev
Log:
Created the Relax_fit.test_saturation_recovery system test.
This follows from the discussion of
http://thread.gmane.org/gmane.science.nmr.relax.devel/7308/focus=7369.
Author: bugman
Date: Sat Nov 29 10:10:56 2014
New Revision: 26825
URL: http://svn.gna.org/viewcvs/relax?rev=26825&view=rev
Log:
Added the saturation recovery experiment to the relax_fit.select_model user
function.
This simply adds a new option and sets up a different parameter set [Rx, Iinf].
Author: bugman
Date: Sat Nov 29 10:12:15 2014
New Revision: 26826
URL: http://svn.gna.org/viewcvs/relax?rev=26826&view=rev
Log:
Modified the Relax_fit.test_saturation_recovery system test script.
The relax_fit.select_model user function call now selects the 'sat' model.
Modified:
trunk/test
Author: bugman
Date: Sat Nov 29 10:13:10 2014
New Revision: 26827
URL: http://svn.gna.org/viewcvs/relax?rev=26827&view=rev
Log:
Fix for the relax_fit.select_model user function backend for the 'sat' model.
Modified:
trunk/specific_analyses/relax_fit/uf.py
Modified: trunk/specific_analyses/r
Author: bugman
Date: Sat Nov 29 10:18:50 2014
New Revision: 26828
URL: http://svn.gna.org/viewcvs/relax?rev=26828&view=rev
Log:
The exponential model name is now being passed into the target function class.
The model as specified by the relax_fit.select_model user function is now
finally being s
Author: bugman
Date: Sat Nov 29 10:23:52 2014
New Revision: 26829
URL: http://svn.gna.org/viewcvs/relax?rev=26829&view=rev
Log:
Small fix for the relax_fit.select_model user function.
Modified:
trunk/specific_analyses/relax_fit/uf.py
Modified: trunk/specific_analyses/relax_fit/uf.py
URL:
h
Author: bugman
Date: Sat Nov 29 10:26:15 2014
New Revision: 26830
URL: http://svn.gna.org/viewcvs/relax?rev=26830&view=rev
Log:
Renamed all of the relaxation curve-fitting target functions.
This includes all of the C functions which are model specific, by appending
'_exp' to the current
names to
Author: bugman
Date: Sat Nov 29 10:27:28 2014
New Revision: 26831
URL: http://svn.gna.org/viewcvs/relax?rev=26831&view=rev
Log:
Alphabetical ordering of the C function imports in the
target_functions.relax_fit_wrapper module.
Modified:
trunk/target_functions/relax_fit_wrapper.py
Modified:
Author: bugman
Date: Sat Nov 29 11:14:31 2014
New Revision: 26832
URL: http://svn.gna.org/viewcvs/relax?rev=26832&view=rev
Log:
Modified the relax_fit.test_saturation_recovery system test to check for Iinf
instead of I0.
Modified:
trunk/test_suite/system_tests/relax_fit.py
Modified: trunk/
Author: bugman
Date: Sat Nov 29 11:16:08 2014
New Revision: 26833
URL: http://svn.gna.org/viewcvs/relax?rev=26833&view=rev
Log:
Added support for the saturation recovery experiment to parameter disassembly
function.
This is in the disassemble_param_vector() function of the
specific_analyses.rel
Author: bugman
Date: Sat Nov 29 11:24:15 2014
New Revision: 26834
URL: http://svn.gna.org/viewcvs/relax?rev=26834&view=rev
Log:
Implemented the target functions for the saturation recovery exponential curve.
In the Python target function class Relax_fit_opt, the new func_sat(),
dfunc_sat() and d
Author: bugman
Date: Sat Nov 29 13:29:52 2014
New Revision: 26835
URL: http://svn.gna.org/viewcvs/relax?rev=26835&view=rev
Log:
Split the saturation recovery exponential equations and partial derivatives
into their own C file.
Added:
trunk/target_functions/exponential_sat.c
- copied,
Author: bugman
Date: Sat Nov 29 13:43:44 2014
New Revision: 26836
URL: http://svn.gna.org/viewcvs/relax?rev=26836&view=rev
Log:
Expansion and improvements for the relax_fit.select_model user function
documentation and printouts.
Modified:
trunk/specific_analyses/relax_fit/uf.py
trunk/us
Author: bugman
Date: Sat Nov 29 13:46:35 2014
New Revision: 26837
URL: http://svn.gna.org/viewcvs/relax?rev=26837&view=rev
Log:
The relax_fit.relax_time and relax_fit.select_model user functions now have
wizard graphics.
The R1 graphic from graphics/analyses/r1_200x200.png is now being used.
M
Author: bugman
Date: Sat Nov 29 13:49:48 2014
New Revision: 26838
URL: http://svn.gna.org/viewcvs/relax?rev=26838&view=rev
Log:
Added support for the inversion recovery experiment to parameter disassembly
function.
This matches the change of r26833 for the saturation recovery experiment. This
Author: bugman
Date: Sat Nov 29 17:02:18 2014
New Revision: 26839
URL: http://svn.gna.org/viewcvs/relax?rev=26839&view=rev
Log:
Expanded the relax_fit_saturation_recovery.py system test script.
This now calls the error_analysis.covariance_matrix user function to test that
code path.
Modified:
Author: bugman
Date: Sat Nov 29 17:04:00 2014
New Revision: 26840
URL: http://svn.gna.org/viewcvs/relax?rev=26840&view=rev
Log:
Updated the relaxation curve-fitting covariance_matrix() API method to handle
all models.
The check for the 'exp' model type has been eliminated, and the parameter
vec
Author: bugman
Date: Sat Nov 29 17:06:20 2014
New Revision: 26841
URL: http://svn.gna.org/viewcvs/relax?rev=26841&view=rev
Log:
The errors in the Relax_fit.test_saturation_recovery system test are now
reasonable.
They have been set to 5% of Iinf so that the chi-squared value during
optimisation
Author: bugman
Date: Sat Nov 29 17:19:16 2014
New Revision: 26842
URL: http://svn.gna.org/viewcvs/relax?rev=26842&view=rev
Log:
Updated the relaxation curve-fitting get_param_names() API method to handle all
models.
This now simply returns the spin container 'params' list, allowing all models
t
Author: bugman
Date: Sat Nov 29 17:23:53 2014
New Revision: 26843
URL: http://svn.gna.org/viewcvs/relax?rev=26843&view=rev
Log:
Big bug fix for the error_analysis.covariance_matrix user function.
The model_info structure is now being passed into the get_param_names() API
method, as required by
t
Author: bugman
Date: Sat Nov 29 17:25:28 2014
New Revision: 26844
URL: http://svn.gna.org/viewcvs/relax?rev=26844&view=rev
Log:
Another change for the relaxation curve-fitting covariance_matrix() API method
to handle all models.
The scaling matrix diagonalised list of 1.0 values now has the same
Author: bugman
Date: Sat Nov 29 17:30:51 2014
New Revision: 26845
URL: http://svn.gna.org/viewcvs/relax?rev=26845&view=rev
Log:
Implemented the target functions for the inversion recovery exponential curve.
In the Python target function class Relax_fit_opt, the new func_inv(),
dfunc_inv() and d2
Author: bugman
Date: Sat Nov 29 17:41:53 2014
New Revision: 26846
URL: http://svn.gna.org/viewcvs/relax?rev=26846&view=rev
Log:
More editing of the relax_fit.select_model user function.
The IR and SR abbreviations have been added, and a lot of text cleaned up.
Modified:
trunk/user_functions
Author: bugman
Date: Sat Nov 29 17:51:35 2014
New Revision: 26847
URL: http://svn.gna.org/viewcvs/relax?rev=26847&view=rev
Log:
Improvement for the relax_fit.select_model user function in the GUI.
Unicode text is now being used to display the parameters as R_x and I_0 and to
show an infinity
sym
501 - 600 of 22585 matches
Mail list logo
