[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-03-14 Thread felixcheung
Github user felixcheung commented on the issue: https://github.com/apache/spark/pull/16729 merged to master --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have this feature enabled and wishes

[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-03-13 Thread actuaryzhang
Github user actuaryzhang commented on the issue: https://github.com/apache/spark/pull/16729 @felixcheung Could you merge this please? Thanks! --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does not have

[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

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2017-03-13 Thread AmplabJenkins
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2017-03-13 Thread SparkQA
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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-03-12 Thread SparkQA
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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-03-12 Thread actuaryzhang
Github user actuaryzhang commented on the issue: https://github.com/apache/spark/pull/16729 Sorry that I forgot to address that comment. Fixed now. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your project does

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2017-03-12 Thread SparkQA
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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-03-12 Thread SparkQA
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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-03-12 Thread actuaryzhang
Github user actuaryzhang commented on the issue: https://github.com/apache/spark/pull/16729 @felixcheung Thanks for the feedback. Made a new commit that 1. change `variancePower` and `linkPower` to `var.power` and `link.power`. 2. use `link = NULL` for tweedie family.

[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-03-12 Thread felixcheung
Github user felixcheung commented on the issue: https://github.com/apache/spark/pull/16729 I like the example in this implementation! thanks yes I think we should name them `var.power` and `link.power`. --- If your project is set up for it, you can reply to this email and have

[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-03-08 Thread actuaryzhang
Github user actuaryzhang commented on the issue: https://github.com/apache/spark/pull/16729 One other change I could make is to change `variancePower` and `linkPower` to `var.power` and `link.power` to be consistent with `statmod`. But l would like to get your feedback on this new

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2017-03-08 Thread SparkQA
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2017-03-08 Thread SparkQA
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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-03-08 Thread SparkQA
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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-03-08 Thread actuaryzhang
Github user actuaryzhang commented on the issue: https://github.com/apache/spark/pull/16729 @felixcheung OK, new implementation of # 3. Now works in two ways: 1. `family = "tweedie"` + `variancePower` + `linkPower` 2. When `statmod` is available, `tweedie()` Please

[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-03-08 Thread felixcheung
Github user felixcheung commented on the issue: https://github.com/apache/spark/pull/16729 @actuaryzhang that's true, it's not ideal. This is somewhat an unusual case for R for several reasons. In my head the guiding principles are: - we avoid depending on another

[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-03-08 Thread actuaryzhang
Github user actuaryzhang commented on the issue: https://github.com/apache/spark/pull/16729 @felixcheung If we go with # 3, do we still want to compatibility with statmod::tweedie? It's confusing to have two different ways of specifying the same model. --- If your project is set

[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-03-07 Thread felixcheung
Github user felixcheung commented on the issue: https://github.com/apache/spark/pull/16729 yea - I'm sorry if it was confusing - I was referring to `SparkR::tweedie` (2 `:`), and not `SparkR:::tweedie` (3 `:`), which was why I wasn't sure that could be done. In the past

[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-03-07 Thread actuaryzhang
Github user actuaryzhang commented on the issue: https://github.com/apache/spark/pull/16729 @felixcheung Could you take a look at this new fix when you get a chance? Thanks. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as

[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-03-06 Thread actuaryzhang
Github user actuaryzhang commented on the issue: https://github.com/apache/spark/pull/16729 @felixcheung Yes, the SparkR `tweedie` is not exported. See below. ``` model1 <- spark.glm(training, Sepal_Width ~ Sepal_Length + Species, + family =

[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-03-06 Thread felixcheung
Github user felixcheung commented on the issue: https://github.com/apache/spark/pull/16729 Thanks for working on this - to clarify, this only works with `SparkR:::tweedie` (ie. 3 `:`) As this would be a private implementation? --- If your project is set up for it, you can reply

[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-03-05 Thread actuaryzhang
Github user actuaryzhang commented on the issue: https://github.com/apache/spark/pull/16729 @felixcheung Sorry for taking so long for this update. I think your first suggestion makes most sense, i.e., we do not expose the internal `tweedie`. When `statmod` is loaded,

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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-02-15 Thread actuaryzhang
Github user actuaryzhang commented on the issue: https://github.com/apache/spark/pull/16729 @felixcheung Thanks for the discussions. Will work on this in two weeks. --- If your project is set up for it, you can reply to this email and have your reply appear on GitHub as well. If your

[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-02-02 Thread felixcheung
Github user felixcheung commented on the issue: https://github.com/apache/spark/pull/16729 hmm.. I'm not sure we could do that because of Apache licensing policy (unless the owner decides to submit that here). let me think about this a bit. --- If your project is set up for

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2017-02-02 Thread actuaryzhang
Github user actuaryzhang commented on the issue: https://github.com/apache/spark/pull/16729 @felixcheung The one from statmod will be masked and must be called using `statmod:tweedie`. We can copy the whole `tweedie` function from statmod into `SparkR` and this will avoid the

[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-02-01 Thread felixcheung
Github user felixcheung commented on the issue: https://github.com/apache/spark/pull/16729 ah thanks. so I were to ``` library(statmod) library(SparkR) ``` could I still access the statmod tweedie function? ie. does statmod::tweedie still work with R

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2017-02-01 Thread actuaryzhang
Github user actuaryzhang commented on the issue: https://github.com/apache/spark/pull/16729 @felixcheung Great point! Yes, I think it's better to stick with the statmod syntax and allow the tweedie family to be specified as`tweedie(var.power, link.power)`. I tried a few ways to allow

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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-01-29 Thread actuaryzhang
Github user actuaryzhang commented on the issue: https://github.com/apache/spark/pull/16729 @felixcheung Thanks so much for your quick and detailed review. I have made a new commit that removed dependency on `statmod` and fixed the issues you pointed out. The major change is to add

[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-01-29 Thread SparkQA
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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

2017-01-28 Thread felixcheung
Github user felixcheung commented on the issue: https://github.com/apache/spark/pull/16729 I did look into this... I think it's great if `statmod` is there and we support it, but I'm concerned that we can't enable this `tweedie` family without an external dependency and the fact that

[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

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[GitHub] spark issue #16729: [SPARK-19391][SparkR][ML] Tweedie GLM API for SparkR

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