GitHub user wangmiao1981 opened a pull request:
https://github.com/apache/spark/pull/13476
[SPARK-15684][SparkR]Not mask startsWith and endsWith in R
## What changes were proposed in this pull request?
In R 3.3.0, startsWith and endsWith are added. In this PR, I make
Github user wangmiao1981 commented on the issue:
https://github.com/apache/spark/pull/13476
@shivaram It seems that integration server uses a lower version of R. Do
you know whether has a mechanism to optionally compiling functions by checking
version? For example, in C, we can use
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/13476#discussion_r65742476
--- Diff: R/pkg/R/column.R ---
@@ -151,6 +151,40 @@ setMethod("substr", signature(x = "Column"),
Github user wangmiao1981 commented on the issue:
https://github.com/apache/spark/pull/13508
@felixcheung As we discussed, I opened a JIRA on exporting the is.nan. Can
you review it? Thanks!
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Github user wangmiao1981 commented on the issue:
https://github.com/apache/spark/pull/13476
@felixcheung Any more comments? The version check is needed otherwise it
can't pass unit tests. All other review comments are done.
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Github user wangmiao1981 commented on the issue:
https://github.com/apache/spark/pull/13508
@felixcheung Add isnan in the NAMESPACE file.
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GitHub user wangmiao1981 opened a pull request:
https://github.com/apache/spark/pull/13508
[SPARK-15766][SparkR]:R should export is.nan
## What changes were proposed in this pull request?
When reviewing SPARK-15545, we found that is.nan is not exported, which
should
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/13476#discussion_r65657352
--- Diff: R/pkg/R/generics.R ---
@@ -695,10 +695,6 @@ setGeneric("desc", function(x) {
standardGeneric("desc") })
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13284#issuecomment-221656579
Re-tested on Ubuntu, the pipedRDD test case still fails. R version 3.3.0
beta (2016-03-30 r70404)
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13301#issuecomment-221706864
@srowen ML uses the sample_libsvm_data.txt in all three examples.
sample_naive_bayes_data.txt is not in libsvm format. The format is shown
below:
0,1
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13266#issuecomment-221681098
@MLnick Done. Thanks!
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13266#issuecomment-221670964
@MLnick Sure. I will do it soon. Now, I am debugging a R bug. Thanks!
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13284#issuecomment-221476011
@shivaram The pipedRDD one seems working when using sudo in Linux. My mac
does not work though.
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13284#issuecomment-221477072
@shivaram I will make the change with R version check.
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13284#issuecomment-221483353
@shivaram @felixcheung For the failure pipedRDD test case, if I copy &
paste it in the SparkR, it works fine.
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13284#issuecomment-221668874
@shivaram I am debugging and try to find a hint.
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13284#issuecomment-221475397
R version 3.3.0 (2016-05-03) -- "Supposedly Educational"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-apple-da
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13284#issuecomment-221475769
@felixcheung
> conflicts(detail = TRUE)
$.GlobalEnv
[1] "df"
$`package:SparkR`
[1] "alias"
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13301#issuecomment-221722166
@srowen I think we can delete it. Let me double check it and update this
PR. Thanks!
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13301#issuecomment-221722860
I grep all scala/java/py files and there is no reference to the data file.
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GitHub user wangmiao1981 opened a pull request:
https://github.com/apache/spark/pull/13301
[SPARK-15449][MLlib][Example]:Wrong Data Format - Documentation Issue
## What changes were proposed in this pull request?
(Please fill in changes proposed in this fix
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/13284#discussion_r64520919
--- Diff: R/pkg/inst/tests/testthat/test_context.R ---
@@ -24,10 +24,18 @@ test_that("Check masked functions", {
func <- lapply(mas
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13284#issuecomment-221486087
@vectorijk As we discussed above, R version is different on local and
Jenkins. We installed R 3.3.0 in local while Jenkins still uses the old version
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13284#issuecomment-221487340
@vectorijk please run conflicts(detail = TRUE) and check the
$package:SparkR with test_context.R, namesOfMasked.
3.2.0 should have more methods than 3.1.0
GitHub user wangmiao1981 opened a pull request:
https://github.com/apache/spark/pull/13647
[SPARK-15784][ML][WIP]:Add Power Iteration Clustering to spark.ml
## What changes were proposed in this pull request?
This PR is to add Power Iteration Clustering to spark.ml
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/13476#discussion_r65842260
--- Diff: R/pkg/inst/tests/testthat/test_sparkSQL.R ---
@@ -1137,6 +1137,13 @@ test_that("string operators", {
expect_equal(count(wher
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13301#issuecomment-20897
@MLnick Done. removed seed in python and java
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13284#issuecomment-221786544
@shivaram I will create a JIRA soon. Thursday and Friday, I will be on
travel to NYC. Will do it on Saturday.
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13301#issuecomment-222040536
@MLnick I am on travel now. I will update it on Saturday. Thanks!
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Github user wangmiao1981 commented on the issue:
https://github.com/apache/spark/pull/13647
@yanboliang As we discussed offline, I made the implementation. You might
want to take a pass on the implementation. cc @mengxr @josephkb
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GitHub user wangmiao1981 opened a pull request:
https://github.com/apache/spark/pull/13755
[SPARK-16040][MLlib][DOC]:spark.mllib PIC document extra line of refernece
## What changes were proposed in this pull request?
In the 2.0 document, Line "A full ex
GitHub user wangmiao1981 opened a pull request:
https://github.com/apache/spark/pull/11380
merge code
## What changes were proposed in this pull request?
(Please fill in changes proposed in this fix)
## How was this patch tested?
(Please explain how
Github user wangmiao1981 closed the pull request at:
https://github.com/apache/spark/pull/11380
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/11380#issuecomment-189038485
Sorry for mistakenly sending it out. I want to merge Master code to my own
branch.
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/11552#issuecomment-194441901
@GayathriMurali Thanks! I see you add one more classification other than
logisticregression and navie bayes. When I was working on my code base, that
classifier
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/11582#issuecomment-194014892
@srowen I added the title in the pull request. Sorry for causing the
confusion here. I only made changes in one python file. All other changes are
merged from
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/11945#discussion_r57632372
--- Diff: python/pyspark/ml/tests.py ---
@@ -655,6 +656,20 @@ def test_nested_pipeline_persistence(self):
except OSError
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/11945#discussion_r57636219
--- Diff: python/pyspark/ml/tests.py ---
@@ -655,6 +656,20 @@ def test_nested_pipeline_persistence(self):
except OSError
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/12200#discussion_r58754307
--- Diff:
mllib/src/test/scala/org/apache/spark/ml/feature/CountVectorizerSuite.scala ---
@@ -183,6 +183,26 @@ class CountVectorizerSuite extends
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/12200#discussion_r58748929
--- Diff:
mllib/src/test/scala/org/apache/spark/ml/feature/CountVectorizerSuite.scala ---
@@ -183,6 +183,26 @@ class CountVectorizerSuite extends
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/12200#discussion_r58750775
--- Diff:
mllib/src/test/scala/org/apache/spark/ml/feature/CountVectorizerSuite.scala ---
@@ -183,6 +183,26 @@ class CountVectorizerSuite extends
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/12200#discussion_r58744522
--- Diff:
mllib/src/test/scala/org/apache/spark/ml/feature/CountVectorizerSuite.scala ---
@@ -183,6 +183,26 @@ class CountVectorizerSuite extends
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/12200#discussion_r58746316
--- Diff:
mllib/src/test/scala/org/apache/spark/ml/feature/CountVectorizerSuite.scala ---
@@ -183,6 +183,26 @@ class CountVectorizerSuite extends
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/12116#discussion_r58909275
--- Diff: python/pyspark/ml/regression.py ---
@@ -425,6 +425,10 @@ class DecisionTreeRegressor(JavaEstimator,
HasFeaturesCol, HasLabelCol, HasPredi
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12200#issuecomment-206999812
@MLnick I will revise the test accordingly. I think after testing the
estimator, I need to turn off the flag of the trained model first. Otherwise,
the binary
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/12200#discussion_r58929398
--- Diff:
mllib/src/main/scala/org/apache/spark/ml/feature/CountVectorizer.scala ---
@@ -127,6 +146,9 @@ class CountVectorizer(override val uid: String
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12116#issuecomment-205896732
@holdenk Thanks for your comments! I will make changes accordingly.
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Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/12200#discussion_r58662007
--- Diff:
mllib/src/test/scala/org/apache/spark/ml/feature/CountVectorizerSuite.scala ---
@@ -115,6 +115,27 @@ class CountVectorizerSuite extends
GitHub user wangmiao1981 opened a pull request:
https://github.com/apache/spark/pull/12200
[SPARK-14392][ML]CountVectorizer Estimator should include binary toggle
Param
## What changes were proposed in this pull request?
CountVectorizerModel has a binary toggle param
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12200#issuecomment-206181665
@MLnick can you trigger the auto test? It seems that I am not in the white
list. I had one JIRA merged to master. Thanks!
Miao
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12116#issuecomment-206145891
@jkbradley Can you add me to white list to trigger the integration test?
Thanks!
Miao
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12116#issuecomment-206449257
@holdenk I am think what tests should be added. Do you have any suggestions?
Thanks!
Miao
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Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/12200#discussion_r58739580
--- Diff:
mllib/src/main/scala/org/apache/spark/ml/feature/CountVectorizer.scala ---
@@ -42,7 +42,8 @@ private[feature] trait CountVectorizerParams
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/12200#discussion_r58740250
--- Diff:
mllib/src/main/scala/org/apache/spark/ml/feature/CountVectorizer.scala ---
@@ -100,6 +103,24 @@ private[feature] trait CountVectorizerParams
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/12116#discussion_r58981236
--- Diff: python/pyspark/ml/regression.py ---
@@ -433,12 +440,12 @@ class DecisionTreeRegressor(JavaEstimator,
HasFeaturesCol, HasLabelCol, HasPredi
Github user wangmiao1981 closed the pull request at:
https://github.com/apache/spark/pull/11582
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/11582#issuecomment-198064456
close this one as it has been merged with 11707.
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/11945#issuecomment-201146670
Found the issue:
PEP8 checks failed.
./python/pyspark/ml/tests.py:658:5: E301 expected 1 blank line, found 0
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/11945#issuecomment-201146467
Build finished. The HTML pages are in _build/html.
[error] running
/home/jenkins/workspace/SparkPullRequestBuilder@3/dev/lint-python ; received
return code 1
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/11945#issuecomment-201174996
Jenkins, test this please
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/11945#issuecomment-201375961
Jenkins, test this please
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GitHub user wangmiao1981 opened a pull request:
https://github.com/apache/spark/pull/11945
[SPARK-14071][PySpark][ML]Change MLWritable.write to be a property
Add property to MLWritable.write method, so we can use .write instead of
.write()
Add a new test to ml/test.py
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/11945#issuecomment-201947768
@jkbradley I am not sure whether the property tag will change the
appearance of the members in the doc. I can do a quick check by roll-back the
change to check
GitHub user wangmiao1981 opened a pull request:
https://github.com/apache/spark/pull/11582
SPARK-13034
I added Import and Export for Logisticregression and Naive Bayes
Test ./python/run-tests --python-executables=python2.7 --modules=pyspark-ml
Result:
Running
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/11552#issuecomment-193931859
Hi Gayathri,
I put my comments in the JIRA about 2 weeks ago and worked with Yanbo on
putting some code.
Can we work together to get it merged? I
GitHub user wangmiao1981 opened a pull request:
https://github.com/apache/spark/pull/12116
[SPARK-12569][PySpark][ML]:DecisionTreeRegressor: provide variance of
prediction: Python AP
## What changes were proposed in this pull request?
A new column VarianceCol has been
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/11945#discussion_r57545765
--- Diff: python/pyspark/ml/tests.py ---
@@ -655,6 +656,20 @@ def test_nested_pipeline_persistence(self):
except OSError
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12116#issuecomment-205513619
@holdenk Thanks for pointing it out. I will revise it.
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12116#issuecomment-205520304
@holdenk I made the changes and tested the gen code. Can you review it?
Thanks!
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12560#issuecomment-214515243
@MLnick I agree. I will remove the feature log now and only log parameters.
I will keep the named feature method.
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12560#issuecomment-214474647
@MLnick Yanbo does not like the change of train() API. The new parameter is
optional, so the user of train should not be aware of this change. In addition,
I
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/12402#discussion_r60963521
--- Diff: python/pyspark/ml/clustering.py ---
@@ -22,7 +22,151 @@
from pyspark.mllib.common import inherit_doc
__all__
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/12560#discussion_r60701976
--- Diff: mllib/src/main/scala/org/apache/spark/ml/recommendation/ALS.scala
---
@@ -607,7 +611,8 @@ object ALS extends DefaultParamsReadable[ALS
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12560#issuecomment-213264393
retest this please
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Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/12402#discussion_r60694336
--- Diff:
mllib/src/main/scala/org/apache/spark/ml/clustering/GaussianMixture.scala ---
@@ -104,6 +105,17 @@ class GaussianMixtureModel private[ml
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12402#issuecomment-213306253
retest this please.
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12560#issuecomment-213023729
Thanks all for your comments! Let me figure out how to collect the
information without slowing the algorithm. @MLnick The names are passed to the
log. For example
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12560#issuecomment-213059111
@thunterdb train method has count information, but it will change the
signature of the train method. I am learning how to avoid collect and changing
signature
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12402#issuecomment-213096256
@jkbradley @yanboliang I made changes and remove unused import.
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12402#issuecomment-213514940
@yanboliang @jkbradley I made all suggested changes and improved document
in the comments. Thanks!
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GitHub user wangmiao1981 opened a pull request:
https://github.com/apache/spark/pull/12717
[SPARK-14937][ML][Document]spark.ml LogisticRegression sqlCtx in scala is
inconsistent with java and python
## What changes were proposed in this pull request?
In spark.ml document
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12717#issuecomment-214919250
retest this please.
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Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/12717#discussion_r61305059
--- Diff:
examples/src/main/scala/org/apache/spark/examples/ml/LogisticRegressionSummaryExample.scala
---
@@ -30,11 +30,11 @@ object
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12560#issuecomment-215135795
@MLnick @yanboliang Any further comments? Thanks!
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Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/12717#discussion_r61288394
--- Diff:
examples/src/main/scala/org/apache/spark/examples/ml/LogisticRegressionSummaryExample.scala
---
@@ -30,11 +30,11 @@ object
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/12717#discussion_r61306574
--- Diff:
examples/src/main/scala/org/apache/spark/examples/ml/LogisticRegressionSummaryExample.scala
---
@@ -30,11 +30,11 @@ object
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12560#issuecomment-215235728
@thunterdb What do you think about our discussions? Thanks!
Miao
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12717#issuecomment-214970534
@yanboliang Can you take a look ? It is a simple fix. Thanks!
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12788#issuecomment-215999406
cc @yanboliang @jkbradley @MLnick @holdenk
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/12402#issuecomment-213232640
@jkbradley Thanks for your review! I will make the changes accordingly.
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Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/13163#discussion_r63970749
--- Diff:
launcher/src/test/java/org/apache/spark/launcher/SparkSubmitCommandBuilderSuite.java
---
@@ -59,6 +59,17 @@ public void
GitHub user wangmiao1981 opened a pull request:
https://github.com/apache/spark/pull/13163
[SPARK-15360][Spark-Submit]Should print spark-submit usage when no
arguments is specified
## What changes were proposed in this pull request?
(Please fill in changes proposed
Github user wangmiao1981 commented on a diff in the pull request:
https://github.com/apache/spark/pull/13163#discussion_r63988573
--- Diff:
launcher/src/test/java/org/apache/spark/launcher/SparkSubmitCommandBuilderSuite.java
---
@@ -59,6 +59,18 @@ public void
GitHub user wangmiao1981 opened a pull request:
https://github.com/apache/spark/pull/13213
[SPARK-15363][ML][Example]:Example code shouldn't use VectorImplicits._,
asML/fromML
## What changes were proposed in this pull request?
(Please fill in changes proposed in this fix
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13266#issuecomment-221168009
@jerryshao We have several similar bugs fixed. I am doing QA for ML 2.0
document now.
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GitHub user wangmiao1981 opened a pull request:
https://github.com/apache/spark/pull/13284
[SPARK-15439][SparkR]:Failed to run unit test in SparkR
## What changes were proposed in this pull request?
(Please fill in changes proposed in this fix)
There are some failures
GitHub user wangmiao1981 opened a pull request:
https://github.com/apache/spark/pull/13266
[SPARK-15492][ML][DOC]:Binarization scala example copy & paste to
spark-shell error
## What changes were proposed in this pull request?
(Please fill in changes proposed in this
Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13163#issuecomment-220163385
retest this please
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13163#issuecomment-220198683
@vanzin Yes, that is what I mean and I want to confirm with you. I only
check no exception.
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Github user wangmiao1981 commented on the pull request:
https://github.com/apache/spark/pull/13163#issuecomment-220186565
retest this please
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