[sage-devel] Re: Some doctests are not being run

2015-06-10 Thread Nathann Cohen
Yo ! There are 9 tests in sage/graphs/graph_plot.py that are not being run Those are fixed in http://trac.sagemath.org/ticket/18658 (needs_review) Nathann -- You received this message because you are subscribed to the Google Groups sage-devel group. To unsubscribe from this

[sage-devel] trouble compiling sage in git-trac

2015-06-10 Thread David Perkinson
I am still trying to post revisions to sandpile.py. The next issue is compiling sage with the git-trac directory. The file pexpect.py seems to be missing. Here is the error message: Found local metadata for conway_polynomials-0.4.p0 Using cached file

Re: [sage-devel] Re: List of methods at beginning of files

2015-06-10 Thread Nathann Cohen
For graphs, the list is also long and is separated by theme (everything done by hand) : I also like those a lot: http://doc.sagemath.org/html/en/reference/graphs/sage/graphs/graph_generators.html http://doc.sagemath.org/html/en/reference/combinat/sage/combinat/designs/database.html It would be

[sage-devel] Re: List of methods at beginning of files

2015-06-10 Thread Sébastien Labbé
For graphs, the list is also long and is separated by theme (everything done by hand) : http://doc.sagemath.org/html/en/reference/graphs/sage/graphs/generic_graph.html See also sage/graphs/graph_plot.py for an example of how __doc__ string is being created using a for loop. Sébastien -- You

Re: [sage-devel] List of methods at beginning of files

2015-06-10 Thread Jori Mäntysalo
On Tue, 9 Jun 2015, Anne Schilling wrote: Some of us at Sage Days 65 are looking at the long list of methods that exist for certain objects, for example in the Permutation http://doc.sagemath.org/html/en/reference/combinat/sage/combinat/permutation.html#sage-combinat-permutation I have just

[sage-combinat-devel] Re: List of methods at beginning of files

2015-06-10 Thread Sébastien Labbé
For graphs, the list is also long and is separated by theme (everything done by hand) : http://doc.sagemath.org/html/en/reference/graphs/sage/graphs/generic_graph.html See also sage/graphs/graph_plot.py for an example of how __doc__ string is being created using a for loop. Sébastien -- You

Re: [sage-devel] Some doctests are not being run

2015-06-10 Thread Jeroen Demeyer
On 2015-06-10 08:05, John H Palmieri wrote: It looks to me as though many of these should be run, but they are not because of a combination of the formatting of the docstring and the doctesting infrastructure. Yes, this is http://trac.sagemath.org/ticket/14272 -- You received this message

[sage-combinat-devel] Re: [sage-devel] Re: List of methods at beginning of files

2015-06-10 Thread Nathann Cohen
For graphs, the list is also long and is separated by theme (everything done by hand) : I also like those a lot: http://doc.sagemath.org/html/en/reference/graphs/sage/graphs/graph_generators.html http://doc.sagemath.org/html/en/reference/combinat/sage/combinat/designs/database.html It would be

[sage-devel] Re: trouble compiling sage in git-trac

2015-06-10 Thread David Perkinson
I've already tried that. I get the same error message. On Wednesday, June 10, 2015 at 6:55:00 AM UTC-7, Volker Braun wrote: Try to rebuild everything from scratch (make distclean make). Will take a while... On Wednesday, June 10, 2015 at 3:13:15 PM UTC+2, David Perkinson wrote: I am

[sage-devel] Re: trouble compiling sage in git-trac

2015-06-10 Thread Volker Braun
Which version of Sage are you trying to build and whats in logs/pkgs/pexpect-2.0.p6.log? The first error is relevant, the last error is probably not. On Wednesday, June 10, 2015 at 4:09:11 PM UTC+2, David Perkinson wrote: I've already tried that. I get the same error message. On

[sage-devel] Re: trouble compiling sage in git-trac

2015-06-10 Thread Volker Braun
Try to rebuild everything from scratch (make distclean make). Will take a while... On Wednesday, June 10, 2015 at 3:13:15 PM UTC+2, David Perkinson wrote: I am still trying to post revisions to sandpile.py. The next issue is compiling sage with the git-trac directory. The file

[sage-devel] Error compiling MPFR on development version install

2015-06-10 Thread Aaron Lauve
Hello, I am having trouble installing development version of Sage on my Mac. (OSX10.9.5, with CommandLineTools for XCode 6.1.1 installed) The error is Error installing package mpfr-3.1.2.p0 Here is the tail of the log file created, which seems to point to not finding float.h (But it can be

[sage-devel] Re: Trouble compiling development branch (Sage version 6.8.beta3, released 2015-06-04)

2015-06-10 Thread David Perkinson
This is the same problem I just posted: see the message with subject header trouble compiling sage in git-trac. On Wednesday, June 10, 2015 at 7:36:09 AM UTC-7, Dinakar Muthiah wrote: Hello, Yesterday, I tried to build the development branch of Sage on my machine and failed. Apparently,

[sage-devel] Error compiling MPFR on development version install

2015-06-10 Thread Anne Schilling
Hello, Aaron Lauve at Sage Days 65 is having trouble installing development version of Sage on my Mac. (OSX10.9.5, with CommandLineTools for XCode 6.1.1 installed) The error is Error installing package mpfr-3.1.2.p0 Here is the tail of the log file created, which seems to point to not finding

[sage-devel] Re: trouble compiling sage in git-trac

2015-06-10 Thread David Perkinson
Sage version 6.8.beta3, released 2015-06-04 There is no logs/pkgs/pexpect-2.0.p6.log. On Wednesday, June 10, 2015 at 7:17:30 AM UTC-7, Volker Braun wrote: Which version of Sage are you trying to build and whats in logs/pkgs/pexpect-2.0.p6.log? The first error is relevant, the last error

[sage-devel] Trouble compiling development branch (Sage version 6.8.beta3, released 2015-06-04)

2015-06-10 Thread Dinakar Muthiah
Hello, Yesterday, I tried to build the development branch of Sage on my machine and failed. Apparently, the error occurs when attempting to build conway_polynomials-0.4.p0. Here are my machine specs: Lubuntu 14.10 Virtual Machine running on Mac OSX Lion The underlying hardware is a MacbookAir.

[sage-devel] Some doctests are not being run

2015-06-10 Thread John H Palmieri
I noticed the following in doctest/sources.py: There are 7 tests in sage/combinat/dyck_word.py that are not being run There are 4 tests in sage/combinat/finite_state_machine.py that are not being run There are 6 tests in sage/combinat/interval_posets.py that

Re: [sage-combinat-devel] Re: remove combinat/mupad from sagemath website

2015-06-10 Thread Nathann Cohen
Yo ! Me neither. The current situation isn't ideal, but just removing one page and merging everything else doesn't help. That's not what the pull request does. Nathann -- You received this message because you are subscribed to the Google Groups sage-combinat-devel group. To unsubscribe

Re: [sage-combinat-devel] Re: remove combinat/mupad from sagemath website

2015-06-10 Thread Nathann Cohen
Well, that's a little bit insulting. I'm that nobody and just for the record, I did work quite a lot of work last august. Well no, nobody means nobody. You are the first one who told me about these scripts that nobody understands. You could also ask me -- but despite that, I do not really

Re: [sage-devel] Re: trouble compiling sage in git-trac

2015-06-10 Thread Volker Braun
git-trac should never be imported in Sage, and it doesn't look that way from the traceback. SAGERUNTIME should depend on PEXPECT, directly or indirectly. On Wednesday, June 10, 2015 at 5:32:35 PM UTC+2, Nathann Cohen wrote: H... Even if it works it is not a good fix :-/ Volker, what

Re: [sage-devel] Re: trouble compiling sage in git-trac

2015-06-10 Thread Nathann Cohen
git-trac should never be imported in Sage, and it doesn't look that way from the traceback. Oh. True. It seems that /home/davidp/sage-devel/git-trac-command/ is SAGE_ROOT O_o SAGERUNTIME should depend on PEXPECT, directly or indirectly. Yes yes yes, that makes sense. But right now it

Re: [sage-devel] Re: trouble compiling sage in git-trac

2015-06-10 Thread David Perkinson
Success! Thanks for the help. On Wednesday, June 10, 2015 at 8:25:59 AM UTC-7, Nathann Cohen wrote: Yo ! which will take several hours, or is some variant of the following better: The second should work. No reason to destroy what you already built I'd say. Nathann -- You

Re: [sage-devel] Re: trouble compiling sage in git-trac

2015-06-10 Thread Nathann Cohen
H... Even if it works it is not a good fix :-/ Volker, what do you think of this scenario: - the git-trac module has been installed before conway_polynomials - you don't need pexpect to *install* git-trac, but you need pexpect to load the git-trac modules - installing conway_polynomials calls

[sage-devel] Re: Trouble compiling development branch (Sage version 6.8.beta3, released 2015-06-04)

2015-06-10 Thread David Perkinson
In case you didn't catch it, Nathann Cohen came up with a solution: Find the file called 'dependencies' in SAGE_ROOT/build/pkgs/conway_polynomials/ and replace the line | $(SAGERUNTIME) with $(INST)/$(PEXPECT) | $(SAGERUNTIME) Then run: export SAGE_KEEP_BUILT_SPKGS='yes' make

[sage-devel] Re: trouble compiling 6.7 because of libgd

2015-06-10 Thread Volker Braun
Post logs. Usually its cruft in /usr/local that gets picked up. On Wednesday, June 10, 2015 at 7:46:51 PM UTC+2, Mike Zabrocki wrote: We are at Sage Days 65 and we are having trouble compiling Sage 6.7 on a Mac with OSX 10.10 and a very recently updated xcode and command line tools. The

Re: [sage-devel] Re: trouble compiling sage in git-trac

2015-06-10 Thread Nathann Cohen
Success! Thanks for the help. You can remove the modification that you made to that file, it is useless now. You probably won't even need it next time you will update your version of Sage (though you may need it if you run 'make distclean' again). And we will try to fix this soon. Nathann

[sage-devel] Re: Error compiling MPFR on development version install

2015-06-10 Thread Volker Braun
Since Apple declined to fix the rootpipe bug in OSX 10.9 I would recommend to upgrade to OSX 10.10 asap, effectively you don't receive security fixes any more. Even then, why did you not upgrade to command line tools 6.2? They should still run on OSX 10.9 On Wednesday, June 10, 2015 at

[sage-devel] Re: trouble compiling 6.7 because of libgd

2015-06-10 Thread Volker Braun
The log has filesystem references to the buildbot, so apparently you are trying to use the binary build for development. Try to run make distclean make overnight... On Wednesday, June 10, 2015 at 7:46:51 PM UTC+2, Mike Zabrocki wrote: We are at Sage Days 65 and we are having trouble

Re: [sage-devel] Re: trouble compiling sage in git-trac

2015-06-10 Thread Nathann Cohen
And we will try to fix this soon. Done at #18666 [1] (needs_review) Nathann [1] http://trac.sagemath.org/ticket/18666 -- You received this message because you are subscribed to the Google Groups sage-devel group. To unsubscribe from this group and stop receiving emails from it, send an

[sage-devel] Re: Trouble compiling development branch (Sage version 6.8.beta3, released 2015-06-04)

2015-06-10 Thread Dinakar Muthiah
Thanks! I am trying it right now, and I will report if it works. On Wednesday, June 10, 2015 at 12:25:43 PM UTC-4, David Perkinson wrote: In case you didn't catch it, Nathann Cohen came up with a solution: Find the file called 'dependencies' in SAGE_ROOT/build/pkgs/conway_polynomials/ and

Re: [sage-devel] Re: About Math Processing Error

2015-06-10 Thread Michael Orlitzky
For whatever it's worth, I have the same issue. The mathjax stuff looks like it's working, but then when processing hits 100%, all of the latex is replaced with [Math Processing Error]. I have the following in my JS console: Error: TypeError: c.FONTDATA.FONTS.MathJax_Main[8212][5] is undefined

[sage-devel] Re: Error compiling MPFR on development version install

2015-06-10 Thread lauve
Volkar: Here's more info: weehawken:sage-git lauve$ gcc --version Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 Apple LLVM version 6.0 (clang-600.0.56) (based on LLVM 3.5svn) Target: x86_64-apple-darwin13.4.0 Thread

[sage-devel] trouble compiling 6.7 because of libgd

2015-06-10 Thread Mike Zabrocki
We are at Sage Days 65 and we are having trouble compiling Sage 6.7 on a Mac with OSX 10.10 and a very recently updated xcode and command line tools. The message is that The following packages(s) may have failed to build: libgd-2.1.1.p0 We looked and there were tickets #18293 and #18364 that

Re: [sage-devel] Re: About Math Processing Error

2015-06-10 Thread Andrey Novoseltsev
On Wednesday, 10 June 2015 11:41:37 UTC-6, Michael Orlitzky wrote: For whatever it's worth, I have the same issue. The mathjax stuff looks like it's working, It is working and first shows you fast-preview using HTML fonts - it appears very quickly and look OK for simple formulas, but

[sage-devel] The future of polybori

2015-06-10 Thread François Bissey
Hi all, over at http://trac.sagemath.org/ticket/18437 we have some heated debate about what to do about polybori. Let me summarize the situation. * at this moment polybori is dead upstream * polybori is the last package using scons * is one of the last packages, if not the last, not ready for

[sage-devel] Re: Error compiling MPFR on development version install

2015-06-10 Thread Volker Braun
CommandLineTools for XCode 6.1.1 is old and buggy... Also, are you sure you are using the compiler you think you are using? You can have multiple ones. Output of gcc --version? On Wednesday, June 10, 2015 at 4:37:13 PM UTC+2, Anne Schilling wrote: Hello, Aaron Lauve at Sage Days 65 is

Re: [sage-devel] The future of polybori

2015-06-10 Thread kcrisman
I have absolutely nothing invested in this, but I am curious about whether bringing (as much as possible of) polybori into the Sage library or extcode-successor or something would help people revivify the project? I don't know how many people there are out there who would be potentially

Re: [sage-devel] The future of polybori

2015-06-10 Thread R. Andrew Ohana
On Wed, Jun 10, 2015 at 6:40 PM, François Bissey francois.bis...@canterbury.ac.nz wrote: Hi all, over at http://trac.sagemath.org/ticket/18437 we have some heated debate about what to do about polybori. Let me summarize the situation. * at this moment polybori is dead upstream * polybori

Re: [sage-devel] The future of polybori

2015-06-10 Thread Francois Bissey
I thought I was going to misrepresent stuff, but may be not to that extent. If we fork polybori I do not see the point of patching it for sage on top of the fork. (3) is very much out as far as I am concerned. François On 11/06/2015, at 14:08, R. Andrew Ohana andrew.oh...@gmail.com wrote:

Re: [sage-devel] The future of polybori

2015-06-10 Thread François Bissey
On 06/11/15 14:39, William Stein wrote: I could easily imagine Andrew and Francois and Jereon are all dutifully imagining that I know all kinds of Polybori enthusiasts and there are good reasons that Polybori really must be really well supported in Sage. However, it turns out this at least

[sage-devel] Re: trouble compiling 6.7 because of libgd

2015-06-10 Thread Stephen Doty
Ah, yes, that makes sense. I should have thought of that! Your suggestion worked perfectly, thanks. On Wednesday, June 10, 2015 at 3:39:03 PM UTC-5, Volker Braun wrote: The log has filesystem references to the buildbot, so apparently you are trying to use the binary build for development.

Re: [sage-devel] The future of polybori

2015-06-10 Thread William Stein
On Wednesday, June 10, 2015, Ralf Stephan gtrw...@gmail.com wrote: There is not much difference between 1 and 2 because, while there is no review mechanism for Pynac admin commits on github, it's on trac instead. And the real problem is always the language barrier: adding C++ to an already

Re: [sage-devel] The future of polybori

2015-06-10 Thread William Stein
Hi, Can somebody (say at least 3-5 people) who actually *use* polybori on a somewhat regular basis make some supporting remarks?I personally have used polybori for anything, nor do I really know of anybody else who has. If there aren't at least a few people who use it regularly, then we

Re: [sage-devel] The future of polybori

2015-06-10 Thread William Stein
On Wednesday, June 10, 2015, François Bissey francois.bis...@canterbury.ac.nz wrote: On 06/11/15 14:39, William Stein wrote: I could easily imagine Andrew and Francois and Jereon are all dutifully imagining that I know all kinds of Polybori enthusiasts and there are good reasons that

Re: [sage-devel] The future of polybori

2015-06-10 Thread Ralf Stephan
There is not much difference between 1 and 2 because, while there is no review mechanism for Pynac admin commits on github, it's on trac instead. And the real problem is always the language barrier: adding C++ to an already huge skillset is too much for many authors and most reviewers,

[sage-devel] Re: trouble compiling sage in git-trac

2015-06-10 Thread Volker Braun
On Wednesday, June 10, 2015 at 4:34:01 PM UTC+2, David Perkinson wrote: There is no logs/pkgs/pexpect-2.0.p6.log. So that explains your error. You need to check the build log to find out why; presumably some dependency failed. -- You received this message because you are subscribed to the

Re: [sage-devel] Re: trouble compiling sage in git-trac

2015-06-10 Thread Nathann Cohen
David: there is in SAGE_ROOT/build/pkgs/conway_polynomials/ a file named 'dependencies', whose first line should be: | $(SAGERUNTIME) Could you replace it with $(INST)/$(PEXPECT) | $(SAGERUNTIME) And tell us if running 'make' works better then? Nathann On 10 June 2015 at 17:13,

Re: [sage-devel] Re: trouble compiling sage in git-trac

2015-06-10 Thread Nathann Cohen
So that explains your error. You need to check the build log to find out why; presumably some dependency failed. conway_polynomial does not state a dependency on pexpect. Couldn't this be the problem? Nathann -- You received this message because you are subscribed to the Google Groups

Re: [sage-devel] Re: trouble compiling sage in git-trac

2015-06-10 Thread David Perkinson
Sure, I can try that. Should I enter: make distclean make which will take several hours, or is some variant of the following better: export SAGE_KEEP_BUILT_SPKGS='yes' make Thanks. On Wednesday, June 10, 2015 at 8:17:07 AM UTC-7, Nathann Cohen wrote: David: there is in

Re: [sage-devel] Re: trouble compiling sage in git-trac

2015-06-10 Thread Nathann Cohen
Yo ! which will take several hours, or is some variant of the following better: The second should work. No reason to destroy what you already built I'd say. Nathann -- You received this message because you are subscribed to the Google Groups sage-devel group. To unsubscribe from this group