Hi Guillermo,
Yes, certainly if you're running out of space then that could cause the
problem. In fact, given the context, that's probably likely.
BTW, if those BAM files are from tophat, then the merged BAM file should
still be sorted (even if the header doesn't say so).
Devon
--
Devon Ryan,
Hi Guillermo,
Yeah, some of the older versions always used to incorrectly give the EOF
warning when you used a pipe as input. That was quite annoying.
The compilation error is due to the linker not being able to find a
function that should be provided by zlib. What version of zlib do you have
on
Hello!
Since a few day that I'm trying to solve this problem. I'll thanks you
so much I you help me with this.
Using the old version of samtools I'm constantly having this error:
samtools merge - SRR*trim/accepted_hits.bam | samtools sort - TOTAL2
[bam_sort_core] merging from 839 files...
[ba
Dear SAMTools,
I'm trying to 'make' the source I downloaded from your website so I can use the
tools to do some sequencing but I always get the following error at the end of
the 'make' routine:
make[1]: Leaving directory '/home/bob/samtools/htslib-1.0'
gcc -pthread -o samtools bam_index.o bam_
