Hi James,
Are the output files growing in size, or stuck? That might help
identify a problem.
But also, are you really using samtools 1.3.1 (released December
2015), which is over three years old?
If so, it could easily mean a problem with the older version - I would
try updating to 1.9 which wa
Hello,
I am attempting to convert a BAM file to a CRAM file in order to cut down on
storage needs. The program has been running for over 3 days now and I'm
wondering if that is to be expected or if I did something wrong.
I am running samtools-1.3.1 and I used the following command
samtools vi
