On 27 May 2016, at 06:14, Peter Johansson wrote:
> Seems the problematic entry had a negative QUAL (-2147480064), which looks
> very suspicious. Need to go upstream and look for the source of that.
QUAL is Phred-scaled, so by definition valid values are non-negative. So the
upstream source mig
Hi again,
Seems the problematic entry had a negative QUAL (-2147480064), which
looks very suspicious. Need to go upstream and look for the source of that.
I have no idea why negative QUAL causes a segfault and whether it would
make sense with a more gracious exit. I have attached the problema
Hi,
I get a segfault when I run 'bcftools stats'. Not sure if it's a bug or
incorrect input data. This is with bcftools 1.3.1 with htslib 1.3.1
The command is:
bcftools stats --fasta-ref /usr/local/share/genomes/human_g1k_v37.fasta
KI006.anno.vcf.gz
I get the backtrace below:
Program recei
