Hi all,
I was hoping that someone could point me in the right direction for processing
WGS data for phylogenetics and population genetics. I will soon have 10x whole
genome data for about 27 individuals of a lizard species. I will need to go
from raw reads to multiple sequence alignments and SN
Chris -
There must be oodles of journal articles over the years since about 2010 in
the biology literatrure describing this analysis for non-human species. I
have no experience myself with non-human species. A very vanilla workflow
using bwa-mem and samtools is briefly described at
https://www.
