Re: [Scikit-learn-general] Linking error with intel 13.1

2015-07-12 Thread Lars Buitinck
2015-07-11 22:43 GMT+02:00 Andreas Mueller : > It's a bit odd because numpy is not linked against iomp5. What is that / It's the OpenMP runtime. And by the looks of it, MKL is linking with it. -- Don't Limit Your Business

Re: [Scikit-learn-general] Linking error with intel 13.1

2015-07-11 Thread Andreas Mueller
>>>> print(get_blas_info()) > (['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core', 'pthread'], > {'library_dirs': > ['/N/soft/rhel6/intel/13.1.2/composer_xe_2013.4.183/mkl/lib/intel64/'], > 'define_macros&#x

Re: [Scikit-learn-general] Linking error with intel 13.1

2015-07-11 Thread Fulton, Ben
None >>> print(get_blas_info()) (['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core', 'pthread'], {'library_dirs': ['/N/soft/rhel6/intel/13.1.2/composer_xe_2013.4.183/mkl/lib/intel64/'], 'define_macros': [('SCIPY_M

Re: [Scikit-learn-general] Linking error with intel 13.1

2015-07-11 Thread Andreas Mueller
July 11, 2015 1:12 PM > To: scikit-learn-general@lists.sourceforge.net > Subject: Re: [Scikit-learn-general] Linking error with intel 13.1 > > Hi Ben. > How did you install? > I'm not sure if we can get the linker flags form numpy. Is your numpy also > installed with the

Re: [Scikit-learn-general] Linking error with intel 13.1

2015-07-11 Thread Fulton, Ben
- From: Andreas Mueller [mailto:t3k...@gmail.com] Sent: Saturday, July 11, 2015 1:12 PM To: scikit-learn-general@lists.sourceforge.net Subject: Re: [Scikit-learn-general] Linking error with intel 13.1 Hi Ben. How did you install? I'm not sure if we can get the linker flags form numpy. Is

Re: [Scikit-learn-general] Linking error with intel 13.1

2015-07-11 Thread Andreas Mueller
Hi Ben. How did you install? I'm not sure if we can get the linker flags form numpy. Is your numpy also installed with the intel compiler? Thanks, Andy On 07/11/2015 11:45 AM, Fulton, Ben wrote: > Hi, > > I tried to install sklearn on our cluster. It installed successfully, but > when running w