Re: [SIESTA-L] PDOS and EIG files in transiesta

2020-06-25 Por tôpico Nick Papior
TranSiesta does not use the same file formats. 1) Eigenvalues cannot be calculated using the NEGF formalism, so you won't get the eig file, ever. 2) If you use siesta-4.1 or later you will only get a projected DOS output from TBtrans in the *.TBT.nc files. Subsequently you should use sisl, https:/

RE: [SIESTA-L] PDOS and EIG files in transiesta

2020-06-25 Por tôpico El-abed Haidar
Hello Rayan, 1. For Eigen files you may have forgot WriteEigenvalues true. 2. In order to extract PDOS, I am using sisl. Have a look at siesta mail or nick Papior GitHub page for more details about that. You just have to install sisl onto your terminal and then use the command sdata. Hope

Re: [SIESTA-L] [SIESTA-user] Problem while installing psml compatible SIESTA

2020-06-25 Por tôpico Yuvam Bhateja
Thank you Dr. Papior, I was successful in installing psml enable siesta in parallel execution using your bash files. But there is a problem arising that system is still searching for psf pseudopotetials instead of psml. I installed it multiple times hoping it would fix it but it doesn't. Is there a

[SIESTA-L] Cobalt chain

2020-06-25 Por tôpico rayan moukhadder
Hello everybody, I performed a transiesta run for armchair graphene electrodes sandwiching a cobalt atom and the run was perfectly done at different bais values. later, I tried to add an additional cobalt atom in the scattering region, so that the graphene electrodes are now sandwiching two cobalt

Re: [SIESTA-L] [SIESTA-user] Problem while installing psml compatible SIESTA

2020-06-25 Por tôpico Nick Papior
Could you attach the full output? Also, never run siesta as root. It makes no sense, and HPC centers will not allow it (at least they shouldn't). If the executable is installed in another location, just make sure it is executable by "others". Den tor. 25. jun. 2020 kl. 20.16 skrev Yuvam Bhateja