Re: [SIESTA-L] << compiling siesta-4.1-b1 with NetCDF >>

[Zeila Zanolli]

Hi Jean-Joseph,

have you tried gfortran?
Sometimes intel does not work properly, but gfortran worked well.

cheers
Zeila
---
Dr. Zeila Zanolli

RWTH Aachen, Institute for Theoretical Solid State Physics
ETSF Research Team Leader (http://www.etsf.eu/)

Mobile: +32 487 556699
Office (RWTH): +49 241 80 27030
Office (ULg): +32 (0)4 366 3636
e-mail: zano...@physik.rwth-aachen.de
web: http://zeilazanolli.wordpress.com/home
ResearcherID: http://www.researcherid.com/rid/F-9568-2010



On Tue, Sep 27, 2016 at 1:53 PM, Jean-Joseph Adjizian
 wrote:
> Hello,
>
> Sorry, but it seems that I keep struggling with tbtrans installation.
>
> I have installed netcdf.4.4.1 and netcdf-fortran.
>
> I have used the arch.make given in the previous email.
>
> I compile transiesta with no problem but when I compile tbtrans I get the
> following error when it tries to compile m_tbt_sigma_save.F90.
>
> "
>
> mpiifort -c -O1 -I/projects/acad/ucl-naps/software/netcdf_Tbtrans/include
> -I/projects/acad/ucl-naps/software/netcdf_Tbtrans/include -DCDF -DNCDF_4
> -DNCDF_PARALLEL  -DTBTRANS  m_tbt_sigma_save.F90
> m_tbt_sigma_save.F90(260): error #6404: This name does not have a type, and
> must have an explicit type.   [MPI_COMM_WORLD]
> comm = MPI_COMM_WORLD, &
> ---^
> compilation aborted for m_tbt_sigma_save.F90 (code 1)
> make: *** [m_tbt_sigma_save.o] Error 1
>
> "
>
> I am not really an expert in compilation error, could someone guide me
> please?
>
> Thanks a lot in advance,
>
>
> Jean-Jo
>
>
>
> Le 23/09/16 à 16:25, Nick Papior a écrit :
>
> It should be placed at the end of the arch.make.
>
> Try the attached arch.make file.
>
> 2016-09-23 16:15 GMT+02:00 I. Camps :
>>
>> Sorry, it didn't work :(
>>
>>
>> []'s,
>>
>> Camps
>>
>> On Fri, Sep 23, 2016 at 11:09 AM, Nick Papior 
>> wrote:
>>>
>>> Ah, ok. Now I see.
>>>
>>> You should (both) do this in your arch.make.
>>>
>>> You may track it on launchpad:
>>> https://bugs.launchpad.net/siesta/+bug/1627041
>>>
>>> The easy fix is this:
>>>
>>> FFLAGS += $(INCFLAGS) $(NETCDF_INCFLAGS)
>>>
>>> which should work (disclaimer I haven't tested this).
>>>
>>> 2016-09-23 15:54 GMT+02:00 I. Camps :

 Yes, I compiled everything with the same intel compiler.


 []'s,

 Camps

 On Fri, Sep 23, 2016 at 10:51 AM, Nick Papior 
 wrote:
>
> Have you compiled the netcdf and hdf5 with the same intel compiler?
> That is necessary.
>
> Sadly, this is one of the inconveniences of fortran.
>
> 2016-09-23 15:23 GMT+02:00 I. Camps :
>>
>> Here is the arch.make:
>> ##
>> # source /opt/intel/parallel_studio_xe_2015/psxevars.sh
>> # source /opt/intel/parallel_studio_xe_2017.0.035/psxevars.sh
>> # source /opt/intel/Compiler/11.0/083/bin/ifortvars.sh intel64
>> # source /opt/intel/impi_5.0.2/bin64/mpivars.sh
>> # This file is part of the SIESTA package.
>> #
>> # Copyright (c) Fundacion General Universidad Autonoma de Madrid:
>> # E.Artacho, J.Gale, A.Garcia, J.Junquera, P.Ordejon, D.Sanchez-Portal
>> # and J.M.Soler, 1996- .
>> #
>> # Use of this software constitutes agreement with the full conditions
>> # given in the SIESTA license, as signed by all legitimate users.
>> #
>> # 
>> # Description:
>> #  Intel compiler/mkl  V11 on atto
>> #  OpenMPI with support for Intel compiler V11
>> #  MKL V11 libraries, including a version of BLACS
>> provided
>> # by Intel for the openmpi framework,
>> # and Intel's own Scalapack, Lapack, and
>> BLAS.
>> #
>> # Execution:
>> #
>> #   $(OPENMPI_ROOT)/bin in PATH
>> #   $(OPENMPI_ROOT)/lib in LD_LIBRARY_PATH
>> #
>> #   mpirun -np NPROCS siesta 
>> #
>> SIESTA_ARCH=intel-mpi
>> #
>> #
>> FC=mpiifort
>> FC_SERIAL=ifort
>>
>> #
>> #  You can play with other optimization options
>> #  I am not sure whether the compiler attempts to multithread the code
>> #
>> FFLAGS= -w  -O2 -mp
>> FFLAGS_CHECKS=-g -O0 -debug full -traceback -C
>> FFLAGS_DEBUG= -g
>> LDFLAGS=
>> #COMP_LIBS += libncdf.a libfdict.a
>> RANLIB=echo
>> #
>> # You might want to turn off FoX for Intel11
>> #
>> DUMMY_FOX=--enable-dummy
>> #
>> #
>> NETCDF_ROOT=/software/lib/netcdf
>> NETCDF_INCFLAGS=-I$(NETCDF_ROOT)/include
>> NETCDF_LIBS=-L$(NETCDF_ROOT)/lib64 -lnetcdff -lnetcdf
>> HDF5_ROOT=/software/lib/hdf5
>> LIBS +=-L$(HDF5_ROOT)/lib64 -lhdf5_fortran -lhdf5 -lz
>> FPPFLAGS_CDF=-DCDF 

Re: [SIESTA-L] << compiling siesta-4.1-b1 with NetCDF >>

[Jean-Joseph Adjizian]

Hello,

Sorry, but it seems that I keep struggling with tbtrans installation.

I have installed netcdf.4.4.1 and netcdf-fortran.

I have used the arch.make given in the previous email.

I compile transiesta with no problem but when I compile tbtrans I get 
the following error when it tries to compile m_tbt_sigma_save.F90.


/"
/

/mpiifort -c -O1 
-I/projects/acad/ucl-naps/software/netcdf_Tbtrans/include 
-I/projects/acad/ucl-naps/software/netcdf_Tbtrans/include -DCDF -DNCDF_4 
-DNCDF_PARALLEL  -DTBTRANS m_tbt_sigma_save.F90 //
//m_tbt_sigma_save.F90(260): error #6404: This name does not have a 
type, and must have an explicit type. [MPI_COMM_WORLD]//

//comm = MPI_COMM_WORLD, &//
//---^//
//compilation aborted for m_tbt_sigma_save.F90 (code 1)//
//make: *** [m_tbt_sigma_save.o] Error 1/

"

I am not really an expert in compilation error, could someone guide me 
please?


Thanks a lot in advance,


Jean-Jo



Le 23/09/16 à 16:25, Nick Papior a écrit :

It should be placed at the end of the arch.make.

Try the attached arch.make file.

2016-09-23 16:15 GMT+02:00 I. Camps >:


Sorry, it didn't work :(


[]'s,

Camps

On Fri, Sep 23, 2016 at 11:09 AM, Nick Papior
> wrote:

Ah, ok. Now I see.

You should (both) do this in your arch.make.

You may track it on launchpad:
https://bugs.launchpad.net/siesta/+bug/1627041


The easy fix is this:

FFLAGS += $(INCFLAGS) $(NETCDF_INCFLAGS)

which should work (disclaimer I haven't tested this).

2016-09-23 15:54 GMT+02:00 I. Camps >:

Yes, I compiled everything with the same intel compiler.


[]'s,

Camps

On Fri, Sep 23, 2016 at 10:51 AM, Nick Papior
> wrote:

Have you compiled the netcdf and hdf5 with the same
intel compiler? That is necessary.

Sadly, this is one of the inconveniences of fortran.

2016-09-23 15:23 GMT+02:00 I. Camps >:

Here is the arch.make:
##
# source
/opt/intel/parallel_studio_xe_2015/psxevars.sh
# source
/opt/intel/parallel_studio_xe_2017.0.035/psxevars.sh
# source
/opt/intel/Compiler/11.0/083/bin/ifortvars.sh intel64
# source /opt/intel/impi_5.0.2/bin64/mpivars.sh
# This file is part of the SIESTA package.
#
# Copyright (c) Fundacion General Universidad
Autonoma de Madrid:
# E.Artacho, J.Gale, A.Garcia, J.Junquera,
P.Ordejon, D.Sanchez-Portal
# and J.M.Soler, 1996- .
#
# Use of this software constitutes agreement with
the full conditions
# given in the SIESTA license, as signed by all
legitimate users.
#
# 
# Description:
# Intel compiler/mkl  V11 on atto
# OpenMPI with support for Intel compiler V11
#  MKL V11 libraries, including a
version of BLACS provided
# by Intel for the
openmpi framework,
# and Intel's own
Scalapack, Lapack, and BLAS.
#
# Execution:
#
# $(OPENMPI_ROOT)/bin in PATH
# $(OPENMPI_ROOT)/lib in LD_LIBRARY_PATH
#
#   mpirun -np NPROCS siesta 
#
SIESTA_ARCH=intel-mpi
#
#
FC=mpiifort
FC_SERIAL=ifort

#
#  You can play with other optimization options
#  I am not sure whether the compiler attempts to
multithread the code
#
FFLAGS= -w  -O2 -mp
FFLAGS_CHECKS=-g -O0 -debug full -traceback -C
FFLAGS_DEBUG= -g
LDFLAGS=
#COMP_LIBS += libncdf.a libfdict.a
RANLIB=echo
#
# You might want to turn off FoX for Intel11
#

Re: [SIESTA-L] << compiling siesta-4.1-b1 with NetCDF >>

[Nick Papior]

It should be placed at the end of the arch.make.

Try the attached arch.make file.

2016-09-23 16:15 GMT+02:00 I. Camps :

> Sorry, it didn't work :(
>
>
> []'s,
>
> Camps
>
> On Fri, Sep 23, 2016 at 11:09 AM, Nick Papior 
> wrote:
>
>> Ah, ok. Now I see.
>>
>> You should (both) do this in your arch.make.
>>
>> You may track it on launchpad: https://bugs.launch
>> pad.net/siesta/+bug/1627041
>>
>> The easy fix is this:
>>
>> FFLAGS += $(INCFLAGS) $(NETCDF_INCFLAGS)
>>
>> which should work (disclaimer I haven't tested this).
>>
>> 2016-09-23 15:54 GMT+02:00 I. Camps :
>>
>>> Yes, I compiled everything with the same intel compiler.
>>>
>>>
>>> []'s,
>>>
>>> Camps
>>>
>>> On Fri, Sep 23, 2016 at 10:51 AM, Nick Papior 
>>> wrote:
>>>
 Have you compiled the netcdf and hdf5 with the same intel compiler?
 That is necessary.

 Sadly, this is one of the inconveniences of fortran.

 2016-09-23 15:23 GMT+02:00 I. Camps :

> Here is the arch.make:
> ##
> # source /opt/intel/parallel_studio_xe_2015/psxevars.sh
> # source /opt/intel/parallel_studio_xe_2017.0.035/psxevars.sh
> # source /opt/intel/Compiler/11.0/083/bin/ifortvars.sh intel64
> # source /opt/intel/impi_5.0.2/bin64/mpivars.sh
> # This file is part of the SIESTA package.
> #
> # Copyright (c) Fundacion General Universidad Autonoma de Madrid:
> # E.Artacho, J.Gale, A.Garcia, J.Junquera, P.Ordejon, D.Sanchez-Portal
> # and J.M.Soler, 1996- .
> #
> # Use of this software constitutes agreement with the full conditions
> # given in the SIESTA license, as signed by all legitimate users.
> #
> # 
> # Description:
> #  Intel compiler/mkl  V11 on atto
> #  OpenMPI with support for Intel compiler V11
> #  MKL V11 libraries, including a version of BLACS provided
> # by Intel for the openmpi framework,
> # and Intel's own Scalapack, Lapack, and
> BLAS.
> #
> # Execution:
> #
> #   $(OPENMPI_ROOT)/bin in PATH
> #   $(OPENMPI_ROOT)/lib in LD_LIBRARY_PATH
> #
> #   mpirun -np NPROCS siesta 
> #
> SIESTA_ARCH=intel-mpi
> #
> #
> FC=mpiifort
> FC_SERIAL=ifort
>
> #
> #  You can play with other optimization options
> #  I am not sure whether the compiler attempts to multithread the code
> #
> FFLAGS= -w  -O2 -mp
> FFLAGS_CHECKS=-g -O0 -debug full -traceback -C
> FFLAGS_DEBUG= -g
> LDFLAGS=
> #COMP_LIBS += libncdf.a libfdict.a
> RANLIB=echo
> #
> # You might want to turn off FoX for Intel11
> #
> DUMMY_FOX=--enable-dummy
> #
> #
> NETCDF_ROOT=/software/lib/netcdf
> NETCDF_INCFLAGS=-I$(NETCDF_ROOT)/include
> NETCDF_LIBS=-L$(NETCDF_ROOT)/lib64 -lnetcdff -lnetcdf
> HDF5_ROOT=/software/lib/hdf5
> LIBS +=-L$(HDF5_ROOT)/lib64 -lhdf5_fortran -lhdf5 -lz
> FPPFLAGS_CDF=-DCDF -DNCDF_4 -DNCDF_PARALLEL
> #
> MPI_INTERFACE=libmpi_f90.a
> MPI_INCLUDE=.  # Note . for no-op
> FPPFLAGS_MPI=-DMPI
>
> METIS_LIB=/software/lib/metis/lib/libmetis.a
> FPPFLAGS += -DSIESTA__METIS
>
> #
> # From the "Intel advisor"
> #
> #MKLPATH=/opt/intel/composer_xe_2015/mkl/lib/intel64
> #MKLPATH=/opt/intel/Compiler/11.0/083/mkl/lib/em64t
> MKLPATH=/opt/intel/compilers_and_libraries_2017.0.098/linux/
> mkl/lib/intel64_lin
> SUGGESTED_LIBS=$(MKLPATH)/libmkl_scalapack_lp64.a \
>-Wl,--start-group \
>   $(MKLPATH)/libmkl_intel_lp64.a \
>   $(MKLPATH)/libmkl_sequential.a \
>   $(MKLPATH)/libmkl_core.a \
>   $(MKLPATH)/libmkl_blacs_intelmpi_lp64.a \
>-Wl,--end-group \
>-lpthread
> #
> COMP_LIBS += libncdf.a libfdict.a
>
> LIBS=$(SUGGESTED_LIBS) $(NETCDF_LIBS) $(COMP_LIBS) $(METIS_LIB)
> #
> SYS=nag
> FPPFLAGS= $(FPPFLAGS_CDF) $(FPPFLAGS_MPI)
> INCFLAGS +=$(NETCDF_INCFLAGS)
> #
> .F.o:
> $(FC) -c $(FFLAGS) $(INCFLAGS)  $(FPPFLAGS) $<
> .f.o:
> $(FC) -c $(FFLAGS) $(INCFLAGS)   $<
> .F90.o:
> $(FC) -c $(FFLAGS) $(INCFLAGS)  $(FPPFLAGS) $<
> .f90.o:
> $(FC) -c $(FFLAGS) $(INCFLAGS)  $(FPPFLAGS) $<
> #
>
> ##
>
>
>
> []'s,
>
> Camps
>
> On Fri, Sep 23, 2016 at 2:58 AM, Nick Papior 
> wrote:
>
>> Please attach your entire arch.make file. There are a few unknowns in
>> your compilation process.
>>
>>
>>
>> 2016-09-23 2:52 GMT+02:00 I. Camps :
>>
>>> Hello,
>>>
>>> I am trying to compile siesta-4.1-b1 

Re: [SIESTA-L] << compiling siesta-4.1-b1 with NetCDF >>

[I. Camps]

Sorry, it didn't work :(


[]'s,

Camps

On Fri, Sep 23, 2016 at 11:09 AM, Nick Papior  wrote:

> Ah, ok. Now I see.
>
> You should (both) do this in your arch.make.
>
> You may track it on launchpad: https://bugs.launchpad.net/siesta/+bug/
> 1627041
>
> The easy fix is this:
>
> FFLAGS += $(INCFLAGS) $(NETCDF_INCFLAGS)
>
> which should work (disclaimer I haven't tested this).
>
> 2016-09-23 15:54 GMT+02:00 I. Camps :
>
>> Yes, I compiled everything with the same intel compiler.
>>
>>
>> []'s,
>>
>> Camps
>>
>> On Fri, Sep 23, 2016 at 10:51 AM, Nick Papior 
>> wrote:
>>
>>> Have you compiled the netcdf and hdf5 with the same intel compiler? That
>>> is necessary.
>>>
>>> Sadly, this is one of the inconveniences of fortran.
>>>
>>> 2016-09-23 15:23 GMT+02:00 I. Camps :
>>>
 Here is the arch.make:
 ##
 # source /opt/intel/parallel_studio_xe_2015/psxevars.sh
 # source /opt/intel/parallel_studio_xe_2017.0.035/psxevars.sh
 # source /opt/intel/Compiler/11.0/083/bin/ifortvars.sh intel64
 # source /opt/intel/impi_5.0.2/bin64/mpivars.sh
 # This file is part of the SIESTA package.
 #
 # Copyright (c) Fundacion General Universidad Autonoma de Madrid:
 # E.Artacho, J.Gale, A.Garcia, J.Junquera, P.Ordejon, D.Sanchez-Portal
 # and J.M.Soler, 1996- .
 #
 # Use of this software constitutes agreement with the full conditions
 # given in the SIESTA license, as signed by all legitimate users.
 #
 # 
 # Description:
 #  Intel compiler/mkl  V11 on atto
 #  OpenMPI with support for Intel compiler V11
 #  MKL V11 libraries, including a version of BLACS provided
 # by Intel for the openmpi framework,
 # and Intel's own Scalapack, Lapack, and
 BLAS.
 #
 # Execution:
 #
 #   $(OPENMPI_ROOT)/bin in PATH
 #   $(OPENMPI_ROOT)/lib in LD_LIBRARY_PATH
 #
 #   mpirun -np NPROCS siesta 
 #
 SIESTA_ARCH=intel-mpi
 #
 #
 FC=mpiifort
 FC_SERIAL=ifort

 #
 #  You can play with other optimization options
 #  I am not sure whether the compiler attempts to multithread the code
 #
 FFLAGS= -w  -O2 -mp
 FFLAGS_CHECKS=-g -O0 -debug full -traceback -C
 FFLAGS_DEBUG= -g
 LDFLAGS=
 #COMP_LIBS += libncdf.a libfdict.a
 RANLIB=echo
 #
 # You might want to turn off FoX for Intel11
 #
 DUMMY_FOX=--enable-dummy
 #
 #
 NETCDF_ROOT=/software/lib/netcdf
 NETCDF_INCFLAGS=-I$(NETCDF_ROOT)/include
 NETCDF_LIBS=-L$(NETCDF_ROOT)/lib64 -lnetcdff -lnetcdf
 HDF5_ROOT=/software/lib/hdf5
 LIBS +=-L$(HDF5_ROOT)/lib64 -lhdf5_fortran -lhdf5 -lz
 FPPFLAGS_CDF=-DCDF -DNCDF_4 -DNCDF_PARALLEL
 #
 MPI_INTERFACE=libmpi_f90.a
 MPI_INCLUDE=.  # Note . for no-op
 FPPFLAGS_MPI=-DMPI

 METIS_LIB=/software/lib/metis/lib/libmetis.a
 FPPFLAGS += -DSIESTA__METIS

 #
 # From the "Intel advisor"
 #
 #MKLPATH=/opt/intel/composer_xe_2015/mkl/lib/intel64
 #MKLPATH=/opt/intel/Compiler/11.0/083/mkl/lib/em64t
 MKLPATH=/opt/intel/compilers_and_libraries_2017.0.098/linux/
 mkl/lib/intel64_lin
 SUGGESTED_LIBS=$(MKLPATH)/libmkl_scalapack_lp64.a \
-Wl,--start-group \
   $(MKLPATH)/libmkl_intel_lp64.a \
   $(MKLPATH)/libmkl_sequential.a \
   $(MKLPATH)/libmkl_core.a \
   $(MKLPATH)/libmkl_blacs_intelmpi_lp64.a \
-Wl,--end-group \
-lpthread
 #
 COMP_LIBS += libncdf.a libfdict.a

 LIBS=$(SUGGESTED_LIBS) $(NETCDF_LIBS) $(COMP_LIBS) $(METIS_LIB)
 #
 SYS=nag
 FPPFLAGS= $(FPPFLAGS_CDF) $(FPPFLAGS_MPI)
 INCFLAGS +=$(NETCDF_INCFLAGS)
 #
 .F.o:
 $(FC) -c $(FFLAGS) $(INCFLAGS)  $(FPPFLAGS) $<
 .f.o:
 $(FC) -c $(FFLAGS) $(INCFLAGS)   $<
 .F90.o:
 $(FC) -c $(FFLAGS) $(INCFLAGS)  $(FPPFLAGS) $<
 .f90.o:
 $(FC) -c $(FFLAGS) $(INCFLAGS)  $(FPPFLAGS) $<
 #

 ##



 []'s,

 Camps

 On Fri, Sep 23, 2016 at 2:58 AM, Nick Papior 
 wrote:

> Please attach your entire arch.make file. There are a few unknowns in
> your compilation process.
>
>
>
> 2016-09-23 2:52 GMT+02:00 I. Camps :
>
>> Hello,
>>
>> I am trying to compile siesta-4.1-b1 with NetCDF4 but I am getting
>> into troubles :(
>>
>> The errors are (my system info is bellow):
>> 
>> mpiifort -E -P -x c  -DCDF -DNCDF_4 -DMPI -DNCDF_PARALLEL -I.
>> -I/home/icamps/Temp/SIESTA/siesta-4.1-b1/Src/NCDF/src
>> 

Re: [SIESTA-L] << compiling siesta-4.1-b1 with NetCDF >>

[I. Camps]

Yes, I compiled everything with the same intel compiler.


[]'s,

Camps

On Fri, Sep 23, 2016 at 10:51 AM, Nick Papior  wrote:

> Have you compiled the netcdf and hdf5 with the same intel compiler? That
> is necessary.
>
> Sadly, this is one of the inconveniences of fortran.
>
> 2016-09-23 15:23 GMT+02:00 I. Camps :
>
>> Here is the arch.make:
>> ##
>> # source /opt/intel/parallel_studio_xe_2015/psxevars.sh
>> # source /opt/intel/parallel_studio_xe_2017.0.035/psxevars.sh
>> # source /opt/intel/Compiler/11.0/083/bin/ifortvars.sh intel64
>> # source /opt/intel/impi_5.0.2/bin64/mpivars.sh
>> # This file is part of the SIESTA package.
>> #
>> # Copyright (c) Fundacion General Universidad Autonoma de Madrid:
>> # E.Artacho, J.Gale, A.Garcia, J.Junquera, P.Ordejon, D.Sanchez-Portal
>> # and J.M.Soler, 1996- .
>> #
>> # Use of this software constitutes agreement with the full conditions
>> # given in the SIESTA license, as signed by all legitimate users.
>> #
>> # 
>> # Description:
>> #  Intel compiler/mkl  V11 on atto
>> #  OpenMPI with support for Intel compiler V11
>> #  MKL V11 libraries, including a version of BLACS provided
>> # by Intel for the openmpi framework,
>> # and Intel's own Scalapack, Lapack, and BLAS.
>> #
>> # Execution:
>> #
>> #   $(OPENMPI_ROOT)/bin in PATH
>> #   $(OPENMPI_ROOT)/lib in LD_LIBRARY_PATH
>> #
>> #   mpirun -np NPROCS siesta 
>> #
>> SIESTA_ARCH=intel-mpi
>> #
>> #
>> FC=mpiifort
>> FC_SERIAL=ifort
>>
>> #
>> #  You can play with other optimization options
>> #  I am not sure whether the compiler attempts to multithread the code
>> #
>> FFLAGS= -w  -O2 -mp
>> FFLAGS_CHECKS=-g -O0 -debug full -traceback -C
>> FFLAGS_DEBUG= -g
>> LDFLAGS=
>> #COMP_LIBS += libncdf.a libfdict.a
>> RANLIB=echo
>> #
>> # You might want to turn off FoX for Intel11
>> #
>> DUMMY_FOX=--enable-dummy
>> #
>> #
>> NETCDF_ROOT=/software/lib/netcdf
>> NETCDF_INCFLAGS=-I$(NETCDF_ROOT)/include
>> NETCDF_LIBS=-L$(NETCDF_ROOT)/lib64 -lnetcdff -lnetcdf
>> HDF5_ROOT=/software/lib/hdf5
>> LIBS +=-L$(HDF5_ROOT)/lib64 -lhdf5_fortran -lhdf5 -lz
>> FPPFLAGS_CDF=-DCDF -DNCDF_4 -DNCDF_PARALLEL
>> #
>> MPI_INTERFACE=libmpi_f90.a
>> MPI_INCLUDE=.  # Note . for no-op
>> FPPFLAGS_MPI=-DMPI
>>
>> METIS_LIB=/software/lib/metis/lib/libmetis.a
>> FPPFLAGS += -DSIESTA__METIS
>>
>> #
>> # From the "Intel advisor"
>> #
>> #MKLPATH=/opt/intel/composer_xe_2015/mkl/lib/intel64
>> #MKLPATH=/opt/intel/Compiler/11.0/083/mkl/lib/em64t
>> MKLPATH=/opt/intel/compilers_and_libraries_2017.0.098/linux/
>> mkl/lib/intel64_lin
>> SUGGESTED_LIBS=$(MKLPATH)/libmkl_scalapack_lp64.a \
>>-Wl,--start-group \
>>   $(MKLPATH)/libmkl_intel_lp64.a \
>>   $(MKLPATH)/libmkl_sequential.a \
>>   $(MKLPATH)/libmkl_core.a \
>>   $(MKLPATH)/libmkl_blacs_intelmpi_lp64.a \
>>-Wl,--end-group \
>>-lpthread
>> #
>> COMP_LIBS += libncdf.a libfdict.a
>>
>> LIBS=$(SUGGESTED_LIBS) $(NETCDF_LIBS) $(COMP_LIBS) $(METIS_LIB)
>> #
>> SYS=nag
>> FPPFLAGS= $(FPPFLAGS_CDF) $(FPPFLAGS_MPI)
>> INCFLAGS +=$(NETCDF_INCFLAGS)
>> #
>> .F.o:
>> $(FC) -c $(FFLAGS) $(INCFLAGS)  $(FPPFLAGS) $<
>> .f.o:
>> $(FC) -c $(FFLAGS) $(INCFLAGS)   $<
>> .F90.o:
>> $(FC) -c $(FFLAGS) $(INCFLAGS)  $(FPPFLAGS) $<
>> .f90.o:
>> $(FC) -c $(FFLAGS) $(INCFLAGS)  $(FPPFLAGS) $<
>> #
>>
>> ##
>>
>>
>>
>> []'s,
>>
>> Camps
>>
>> On Fri, Sep 23, 2016 at 2:58 AM, Nick Papior 
>> wrote:
>>
>>> Please attach your entire arch.make file. There are a few unknowns in
>>> your compilation process.
>>>
>>>
>>>
>>> 2016-09-23 2:52 GMT+02:00 I. Camps :
>>>
 Hello,

 I am trying to compile siesta-4.1-b1 with NetCDF4 but I am getting into
 troubles :(

 The errors are (my system info is bellow):
 
 mpiifort -E -P -x c  -DCDF -DNCDF_4 -DMPI -DNCDF_PARALLEL -I.
 -I/home/icamps/Temp/SIESTA/siesta-4.1-b1/Src/NCDF/src
 /home/icamps/Temp/SIESTA/siesta-4.1-b1/Src/NCDF/src/nf_ncdf.F90 | sed
 -e 's/NEWLINE/\n/g;/^$/d;/^\!.*&/d; 
 s/[[:space:]]*##[[:space:]]*\([^[:space:]]*\)/\1/g;
 s/[[:space:]]*#\([^i][^[:space:]]*\)/"\1"/g; s:/ /://:g;
 s/"endif"/\n#endif/g' > nf_ncdf.f90 #2> /dev/null
 ifort: command line warning #10155: ignoring option '-x'; argument
 required
 ifort: error #10236: File not found:  'c'
 mpiifort -c -w -O2 -mp -I../../nf_ncdf.f90
 nf_ncdf.f90(59): error #7002: Error in opening the compiled module
 file.  Check INCLUDE paths.   [NETCDF]
   use netcdf
 --^
 nf_ncdf.f90(95): error #8237: The character length in a component
 declaration shall either be a colon, be an initialization expression, or be
 a specification 

Re: [SIESTA-L] << compiling siesta-4.1-b1 with NetCDF >>

[Nick Papior]

Have you compiled the netcdf and hdf5 with the same intel compiler? That is
necessary.

Sadly, this is one of the inconveniences of fortran.

2016-09-23 15:23 GMT+02:00 I. Camps :

> Here is the arch.make:
> ##
> # source /opt/intel/parallel_studio_xe_2015/psxevars.sh
> # source /opt/intel/parallel_studio_xe_2017.0.035/psxevars.sh
> # source /opt/intel/Compiler/11.0/083/bin/ifortvars.sh intel64
> # source /opt/intel/impi_5.0.2/bin64/mpivars.sh
> # This file is part of the SIESTA package.
> #
> # Copyright (c) Fundacion General Universidad Autonoma de Madrid:
> # E.Artacho, J.Gale, A.Garcia, J.Junquera, P.Ordejon, D.Sanchez-Portal
> # and J.M.Soler, 1996- .
> #
> # Use of this software constitutes agreement with the full conditions
> # given in the SIESTA license, as signed by all legitimate users.
> #
> # 
> # Description:
> #  Intel compiler/mkl  V11 on atto
> #  OpenMPI with support for Intel compiler V11
> #  MKL V11 libraries, including a version of BLACS provided
> # by Intel for the openmpi framework,
> # and Intel's own Scalapack, Lapack, and BLAS.
> #
> # Execution:
> #
> #   $(OPENMPI_ROOT)/bin in PATH
> #   $(OPENMPI_ROOT)/lib in LD_LIBRARY_PATH
> #
> #   mpirun -np NPROCS siesta 
> #
> SIESTA_ARCH=intel-mpi
> #
> #
> FC=mpiifort
> FC_SERIAL=ifort
>
> #
> #  You can play with other optimization options
> #  I am not sure whether the compiler attempts to multithread the code
> #
> FFLAGS= -w  -O2 -mp
> FFLAGS_CHECKS=-g -O0 -debug full -traceback -C
> FFLAGS_DEBUG= -g
> LDFLAGS=
> #COMP_LIBS += libncdf.a libfdict.a
> RANLIB=echo
> #
> # You might want to turn off FoX for Intel11
> #
> DUMMY_FOX=--enable-dummy
> #
> #
> NETCDF_ROOT=/software/lib/netcdf
> NETCDF_INCFLAGS=-I$(NETCDF_ROOT)/include
> NETCDF_LIBS=-L$(NETCDF_ROOT)/lib64 -lnetcdff -lnetcdf
> HDF5_ROOT=/software/lib/hdf5
> LIBS +=-L$(HDF5_ROOT)/lib64 -lhdf5_fortran -lhdf5 -lz
> FPPFLAGS_CDF=-DCDF -DNCDF_4 -DNCDF_PARALLEL
> #
> MPI_INTERFACE=libmpi_f90.a
> MPI_INCLUDE=.  # Note . for no-op
> FPPFLAGS_MPI=-DMPI
>
> METIS_LIB=/software/lib/metis/lib/libmetis.a
> FPPFLAGS += -DSIESTA__METIS
>
> #
> # From the "Intel advisor"
> #
> #MKLPATH=/opt/intel/composer_xe_2015/mkl/lib/intel64
> #MKLPATH=/opt/intel/Compiler/11.0/083/mkl/lib/em64t
> MKLPATH=/opt/intel/compilers_and_libraries_2017.0.098/
> linux/mkl/lib/intel64_lin
> SUGGESTED_LIBS=$(MKLPATH)/libmkl_scalapack_lp64.a \
>-Wl,--start-group \
>   $(MKLPATH)/libmkl_intel_lp64.a \
>   $(MKLPATH)/libmkl_sequential.a \
>   $(MKLPATH)/libmkl_core.a \
>   $(MKLPATH)/libmkl_blacs_intelmpi_lp64.a \
>-Wl,--end-group \
>-lpthread
> #
> COMP_LIBS += libncdf.a libfdict.a
>
> LIBS=$(SUGGESTED_LIBS) $(NETCDF_LIBS) $(COMP_LIBS) $(METIS_LIB)
> #
> SYS=nag
> FPPFLAGS= $(FPPFLAGS_CDF) $(FPPFLAGS_MPI)
> INCFLAGS +=$(NETCDF_INCFLAGS)
> #
> .F.o:
> $(FC) -c $(FFLAGS) $(INCFLAGS)  $(FPPFLAGS) $<
> .f.o:
> $(FC) -c $(FFLAGS) $(INCFLAGS)   $<
> .F90.o:
> $(FC) -c $(FFLAGS) $(INCFLAGS)  $(FPPFLAGS) $<
> .f90.o:
> $(FC) -c $(FFLAGS) $(INCFLAGS)  $(FPPFLAGS) $<
> #
>
> ##
>
>
>
> []'s,
>
> Camps
>
> On Fri, Sep 23, 2016 at 2:58 AM, Nick Papior  wrote:
>
>> Please attach your entire arch.make file. There are a few unknowns in
>> your compilation process.
>>
>>
>>
>> 2016-09-23 2:52 GMT+02:00 I. Camps :
>>
>>> Hello,
>>>
>>> I am trying to compile siesta-4.1-b1 with NetCDF4 but I am getting into
>>> troubles :(
>>>
>>> The errors are (my system info is bellow):
>>> 
>>> mpiifort -E -P -x c  -DCDF -DNCDF_4 -DMPI -DNCDF_PARALLEL -I.
>>> -I/home/icamps/Temp/SIESTA/siesta-4.1-b1/Src/NCDF/src
>>> /home/icamps/Temp/SIESTA/siesta-4.1-b1/Src/NCDF/src/nf_ncdf.F90 | sed
>>> -e 's/NEWLINE/\n/g;/^$/d;/^\!.*&/d; 
>>> s/[[:space:]]*##[[:space:]]*\([^[:space:]]*\)/\1/g;
>>> s/[[:space:]]*#\([^i][^[:space:]]*\)/"\1"/g; s:/ /://:g;
>>> s/"endif"/\n#endif/g' > nf_ncdf.f90 #2> /dev/null
>>> ifort: command line warning #10155: ignoring option '-x'; argument
>>> required
>>> ifort: error #10236: File not found:  'c'
>>> mpiifort -c -w -O2 -mp -I../../nf_ncdf.f90
>>> nf_ncdf.f90(59): error #7002: Error in opening the compiled module
>>> file.  Check INCLUDE paths.   [NETCDF]
>>>   use netcdf
>>> --^
>>> nf_ncdf.f90(95): error #8237: The character length in a component
>>> declaration shall either be a colon, be an initialization expression, or be
>>> a specification expression.   [GRP]
>>>  character(len=NF90_MAX_NAME) :: grp = " "
>>> -^
>>> nf_ncdf.f90(95): error #6404: This name does not have a type, and must
>>> have an explicit type.   [NF90_MAX_NAME]
>>>  character(len=NF90_MAX_NAME) :: grp = " "
>>> ---^
>>> 

Re: [SIESTA-L] << compiling siesta-4.1-b1 with NetCDF >>

[I. Camps]

Here is the arch.make:
##
# source /opt/intel/parallel_studio_xe_2015/psxevars.sh
# source /opt/intel/parallel_studio_xe_2017.0.035/psxevars.sh
# source /opt/intel/Compiler/11.0/083/bin/ifortvars.sh intel64
# source /opt/intel/impi_5.0.2/bin64/mpivars.sh
# This file is part of the SIESTA package.
#
# Copyright (c) Fundacion General Universidad Autonoma de Madrid:
# E.Artacho, J.Gale, A.Garcia, J.Junquera, P.Ordejon, D.Sanchez-Portal
# and J.M.Soler, 1996- .
#
# Use of this software constitutes agreement with the full conditions
# given in the SIESTA license, as signed by all legitimate users.
#
# 
# Description:
#  Intel compiler/mkl  V11 on atto
#  OpenMPI with support for Intel compiler V11
#  MKL V11 libraries, including a version of BLACS provided
# by Intel for the openmpi framework,
# and Intel's own Scalapack, Lapack, and BLAS.
#
# Execution:
#
#   $(OPENMPI_ROOT)/bin in PATH
#   $(OPENMPI_ROOT)/lib in LD_LIBRARY_PATH
#
#   mpirun -np NPROCS siesta 
#
SIESTA_ARCH=intel-mpi
#
#
FC=mpiifort
FC_SERIAL=ifort

#
#  You can play with other optimization options
#  I am not sure whether the compiler attempts to multithread the code
#
FFLAGS= -w  -O2 -mp
FFLAGS_CHECKS=-g -O0 -debug full -traceback -C
FFLAGS_DEBUG= -g
LDFLAGS=
#COMP_LIBS += libncdf.a libfdict.a
RANLIB=echo
#
# You might want to turn off FoX for Intel11
#
DUMMY_FOX=--enable-dummy
#
#
NETCDF_ROOT=/software/lib/netcdf
NETCDF_INCFLAGS=-I$(NETCDF_ROOT)/include
NETCDF_LIBS=-L$(NETCDF_ROOT)/lib64 -lnetcdff -lnetcdf
HDF5_ROOT=/software/lib/hdf5
LIBS +=-L$(HDF5_ROOT)/lib64 -lhdf5_fortran -lhdf5 -lz
FPPFLAGS_CDF=-DCDF -DNCDF_4 -DNCDF_PARALLEL
#
MPI_INTERFACE=libmpi_f90.a
MPI_INCLUDE=.  # Note . for no-op
FPPFLAGS_MPI=-DMPI

METIS_LIB=/software/lib/metis/lib/libmetis.a
FPPFLAGS += -DSIESTA__METIS

#
# From the "Intel advisor"
#
#MKLPATH=/opt/intel/composer_xe_2015/mkl/lib/intel64
#MKLPATH=/opt/intel/Compiler/11.0/083/mkl/lib/em64t
MKLPATH=/opt/intel/compilers_and_libraries_2017.0.098/linux/mkl/lib/intel64_lin
SUGGESTED_LIBS=$(MKLPATH)/libmkl_scalapack_lp64.a \
   -Wl,--start-group \
  $(MKLPATH)/libmkl_intel_lp64.a \
  $(MKLPATH)/libmkl_sequential.a \
  $(MKLPATH)/libmkl_core.a \
  $(MKLPATH)/libmkl_blacs_intelmpi_lp64.a \
   -Wl,--end-group \
   -lpthread
#
COMP_LIBS += libncdf.a libfdict.a

LIBS=$(SUGGESTED_LIBS) $(NETCDF_LIBS) $(COMP_LIBS) $(METIS_LIB)
#
SYS=nag
FPPFLAGS= $(FPPFLAGS_CDF) $(FPPFLAGS_MPI)
INCFLAGS +=$(NETCDF_INCFLAGS)
#
.F.o:
$(FC) -c $(FFLAGS) $(INCFLAGS)  $(FPPFLAGS) $<
.f.o:
$(FC) -c $(FFLAGS) $(INCFLAGS)   $<
.F90.o:
$(FC) -c $(FFLAGS) $(INCFLAGS)  $(FPPFLAGS) $<
.f90.o:
$(FC) -c $(FFLAGS) $(INCFLAGS)  $(FPPFLAGS) $<
#

##



[]'s,

Camps

On Fri, Sep 23, 2016 at 2:58 AM, Nick Papior  wrote:

> Please attach your entire arch.make file. There are a few unknowns in your
> compilation process.
>
>
>
> 2016-09-23 2:52 GMT+02:00 I. Camps :
>
>> Hello,
>>
>> I am trying to compile siesta-4.1-b1 with NetCDF4 but I am getting into
>> troubles :(
>>
>> The errors are (my system info is bellow):
>> 
>> mpiifort -E -P -x c  -DCDF -DNCDF_4 -DMPI -DNCDF_PARALLEL -I.
>> -I/home/icamps/Temp/SIESTA/siesta-4.1-b1/Src/NCDF/src
>> /home/icamps/Temp/SIESTA/siesta-4.1-b1/Src/NCDF/src/nf_ncdf.F90 | sed -e
>> 's/NEWLINE/\n/g;/^$/d;/^\!.*&/d; 
>> s/[[:space:]]*##[[:space:]]*\([^[:space:]]*\)/\1/g;
>> s/[[:space:]]*#\([^i][^[:space:]]*\)/"\1"/g; s:/ /://:g;
>> s/"endif"/\n#endif/g' > nf_ncdf.f90 #2> /dev/null
>> ifort: command line warning #10155: ignoring option '-x'; argument
>> required
>> ifort: error #10236: File not found:  'c'
>> mpiifort -c -w -O2 -mp -I../../nf_ncdf.f90
>> nf_ncdf.f90(59): error #7002: Error in opening the compiled module file.
>> Check INCLUDE paths.   [NETCDF]
>>   use netcdf
>> --^
>> nf_ncdf.f90(95): error #8237: The character length in a component
>> declaration shall either be a colon, be an initialization expression, or be
>> a specification expression.   [GRP]
>>  character(len=NF90_MAX_NAME) :: grp = " "
>> -^
>> nf_ncdf.f90(95): error #6404: This name does not have a type, and must
>> have an explicit type.   [NF90_MAX_NAME]
>>  character(len=NF90_MAX_NAME) :: grp = " "
>> ---^
>> nf_ncdf.f90(255): error #6404: This name does not have a type, and must
>> have an explicit type.   [NF90_MPIIO]
>> par = iand(NF90_MPIIO,this%mode) == NF90_MPIIO
>> ---^
>> nf_ncdf.f90(255): error #6363: The intrinsic data types of the arguments
>> must be the same.   [IAND]
>> par = iand(NF90_MPIIO,this%mode) == NF90_MPIIO
>> --^
>> nf_ncdf.f90(255): error #6404: This name does not have a type, and 

Re: [SIESTA-L] << compiling siesta-4.1-b1 with NetCDF >>

[Nick Papior]

Please attach your entire arch.make file. There are a few unknowns in your
compilation process.



2016-09-23 2:52 GMT+02:00 I. Camps :

> Hello,
>
> I am trying to compile siesta-4.1-b1 with NetCDF4 but I am getting into
> troubles :(
>
> The errors are (my system info is bellow):
> 
> mpiifort -E -P -x c  -DCDF -DNCDF_4 -DMPI -DNCDF_PARALLEL -I.
> -I/home/icamps/Temp/SIESTA/siesta-4.1-b1/Src/NCDF/src
> /home/icamps/Temp/SIESTA/siesta-4.1-b1/Src/NCDF/src/nf_ncdf.F90 | sed -e
> 's/NEWLINE/\n/g;/^$/d;/^\!.*&/d; 
> s/[[:space:]]*##[[:space:]]*\([^[:space:]]*\)/\1/g;
> s/[[:space:]]*#\([^i][^[:space:]]*\)/"\1"/g; s:/ /://:g;
> s/"endif"/\n#endif/g' > nf_ncdf.f90 #2> /dev/null
> ifort: command line warning #10155: ignoring option '-x'; argument required
> ifort: error #10236: File not found:  'c'
> mpiifort -c -w -O2 -mp -I../../nf_ncdf.f90
> nf_ncdf.f90(59): error #7002: Error in opening the compiled module file.
> Check INCLUDE paths.   [NETCDF]
>   use netcdf
> --^
> nf_ncdf.f90(95): error #8237: The character length in a component
> declaration shall either be a colon, be an initialization expression, or be
> a specification expression.   [GRP]
>  character(len=NF90_MAX_NAME) :: grp = " "
> -^
> nf_ncdf.f90(95): error #6404: This name does not have a type, and must
> have an explicit type.   [NF90_MAX_NAME]
>  character(len=NF90_MAX_NAME) :: grp = " "
> ---^
> nf_ncdf.f90(255): error #6404: This name does not have a type, and must
> have an explicit type.   [NF90_MPIIO]
> par = iand(NF90_MPIIO,this%mode) == NF90_MPIIO
> ---^
> nf_ncdf.f90(255): error #6363: The intrinsic data types of the arguments
> must be the same.   [IAND]
> par = iand(NF90_MPIIO,this%mode) == NF90_MPIIO
> --^
> nf_ncdf.f90(255): error #6404: This name does not have a type, and must
> have an explicit type.   [IAND]
> par = iand(NF90_MPIIO,this%mode) == NF90_MPIIO
> --^
> nf_ncdf.f90(257): error #6404: This name does not have a type, and must
> have an explicit type.   [NF90_MPIPOSIX]
> par = iand(NF90_MPIPOSIX,this%mode) == NF90_MPIPOSIX
> ---^
> nf_ncdf.f90(259): error #6404: This name does not have a type, and must
> have an explicit type.   [NF90_PNETCDF]
> par = iand(NF90_PNETCDF,this%mode) == NF90_PNETCDF
> ---^
> nf_ncdf.f90(297): error #6404: This name does not have a type, and must
> have an explicit type.   [NF90_64BIT_OFFSET]
>this%mode = IOR(this%mode,NF90_64BIT_OFFSET)
> -^
> nf_ncdf.f90(297): error #6363: The intrinsic data types of the arguments
> must be the same.   [IOR]
>this%mode = IOR(this%mode,NF90_64BIT_OFFSET)
> -^
> nf_ncdf.f90(311): error #6404: This name does not have a type, and must
> have an explicit type.   [NF90_SHARE]
>  if ( iand(NF90_SHARE,mode) /= NF90_SHARE ) &
> ---^
> nf_ncdf.f90(311): error #6363: The intrinsic data types of the arguments
> must be the same.   [IAND]
>  if ( iand(NF90_SHARE,mode) /= NF90_SHARE ) &
> --^
> nf_ncdf.f90(311): error #6404: This name does not have a type, and must
> have an explicit type.   [IAND]
>  if ( iand(NF90_SHARE,mode) /= NF90_SHARE ) &
> --^
> nf_ncdf.f90(359): error #6404: This name does not have a type, and must
> have an explicit type.   [NF90_FORMAT_CLASSIC]
>case ( NF90_FORMAT_CLASSIC )
> --^
> nf_ncdf.f90(359): error #6601: In a CASE statement, the case-value must be
> a constant expression.   [NF90_FORMAT_CLASSIC]
>case ( NF90_FORMAT_CLASSIC )
> --^
> nf_ncdf.f90(359): error #6612: In a CASE statement, the case-value must be
> of type INTEGER, CHARACTER, or LOGICAL.   [NF90_FORMAT_CLASSIC]
>case ( NF90_FORMAT_CLASSIC )
> --^
> nf_ncdf.f90(359): error #6611: The case-value must be of the same type as
> the case-expr.   [NF90_FORMAT_CLASSIC]
>case ( NF90_FORMAT_CLASSIC )
> --^
> nf_ncdf.f90(361): error #6404: This name does not have a type, and must
> have an explicit type.   [NF90_FORMAT_64BIT]
>case ( NF90_FORMAT_64BIT )
> --^
> nf_ncdf.f90(361): error #6601: In a CASE statement, the case-value must be
> a constant expression.   [NF90_FORMAT_64BIT]
>case ( NF90_FORMAT_64BIT )
> --^
> nf_ncdf.f90(361): error #6612: In a CASE statement, the case-value must be
> of type INTEGER, CHARACTER, or LOGICAL.   [NF90_FORMAT_64BIT]
>case ( NF90_FORMAT_64BIT )
> --^
> nf_ncdf.f90(361): error #6611: The case-value must be of the same type as
> the case-expr.   [NF90_FORMAT_64BIT]
>case ( NF90_FORMAT_64BIT )
> --^
> nf_ncdf.f90(363): error #6404: This name does not have a type, and must
> have an explicit type.   [NF90_FORMAT_NETCDF4]
>

[SIESTA-L] << compiling siesta-4.1-b1 with NetCDF >>

[I. Camps]

Hello,

I am trying to compile siesta-4.1-b1 with NetCDF4 but I am getting into
troubles :(

The errors are (my system info is bellow):

mpiifort -E -P -x c  -DCDF -DNCDF_4 -DMPI -DNCDF_PARALLEL -I.
-I/home/icamps/Temp/SIESTA/siesta-4.1-b1/Src/NCDF/src
/home/icamps/Temp/SIESTA/siesta-4.1-b1/Src/NCDF/src/nf_ncdf.F90 | sed -e
's/NEWLINE/\n/g;/^$/d;/^\!.*&/d;
s/[[:space:]]*##[[:space:]]*\([^[:space:]]*\)/\1/g;
s/[[:space:]]*#\([^i][^[:space:]]*\)/"\1"/g; s:/ /://:g;
s/"endif"/\n#endif/g' > nf_ncdf.f90 #2> /dev/null
ifort: command line warning #10155: ignoring option '-x'; argument required
ifort: error #10236: File not found:  'c'
mpiifort -c -w -O2 -mp -I../../nf_ncdf.f90
nf_ncdf.f90(59): error #7002: Error in opening the compiled module file.
Check INCLUDE paths.   [NETCDF]
  use netcdf
--^
nf_ncdf.f90(95): error #8237: The character length in a component
declaration shall either be a colon, be an initialization expression, or be
a specification expression.   [GRP]
 character(len=NF90_MAX_NAME) :: grp = " "
-^
nf_ncdf.f90(95): error #6404: This name does not have a type, and must have
an explicit type.   [NF90_MAX_NAME]
 character(len=NF90_MAX_NAME) :: grp = " "
---^
nf_ncdf.f90(255): error #6404: This name does not have a type, and must
have an explicit type.   [NF90_MPIIO]
par = iand(NF90_MPIIO,this%mode) == NF90_MPIIO
---^
nf_ncdf.f90(255): error #6363: The intrinsic data types of the arguments
must be the same.   [IAND]
par = iand(NF90_MPIIO,this%mode) == NF90_MPIIO
--^
nf_ncdf.f90(255): error #6404: This name does not have a type, and must
have an explicit type.   [IAND]
par = iand(NF90_MPIIO,this%mode) == NF90_MPIIO
--^
nf_ncdf.f90(257): error #6404: This name does not have a type, and must
have an explicit type.   [NF90_MPIPOSIX]
par = iand(NF90_MPIPOSIX,this%mode) == NF90_MPIPOSIX
---^
nf_ncdf.f90(259): error #6404: This name does not have a type, and must
have an explicit type.   [NF90_PNETCDF]
par = iand(NF90_PNETCDF,this%mode) == NF90_PNETCDF
---^
nf_ncdf.f90(297): error #6404: This name does not have a type, and must
have an explicit type.   [NF90_64BIT_OFFSET]
   this%mode = IOR(this%mode,NF90_64BIT_OFFSET)
-^
nf_ncdf.f90(297): error #6363: The intrinsic data types of the arguments
must be the same.   [IOR]
   this%mode = IOR(this%mode,NF90_64BIT_OFFSET)
-^
nf_ncdf.f90(311): error #6404: This name does not have a type, and must
have an explicit type.   [NF90_SHARE]
 if ( iand(NF90_SHARE,mode) /= NF90_SHARE ) &
---^
nf_ncdf.f90(311): error #6363: The intrinsic data types of the arguments
must be the same.   [IAND]
 if ( iand(NF90_SHARE,mode) /= NF90_SHARE ) &
--^
nf_ncdf.f90(311): error #6404: This name does not have a type, and must
have an explicit type.   [IAND]
 if ( iand(NF90_SHARE,mode) /= NF90_SHARE ) &
--^
nf_ncdf.f90(359): error #6404: This name does not have a type, and must
have an explicit type.   [NF90_FORMAT_CLASSIC]
   case ( NF90_FORMAT_CLASSIC )
--^
nf_ncdf.f90(359): error #6601: In a CASE statement, the case-value must be
a constant expression.   [NF90_FORMAT_CLASSIC]
   case ( NF90_FORMAT_CLASSIC )
--^
nf_ncdf.f90(359): error #6612: In a CASE statement, the case-value must be
of type INTEGER, CHARACTER, or LOGICAL.   [NF90_FORMAT_CLASSIC]
   case ( NF90_FORMAT_CLASSIC )
--^
nf_ncdf.f90(359): error #6611: The case-value must be of the same type as
the case-expr.   [NF90_FORMAT_CLASSIC]
   case ( NF90_FORMAT_CLASSIC )
--^
nf_ncdf.f90(361): error #6404: This name does not have a type, and must
have an explicit type.   [NF90_FORMAT_64BIT]
   case ( NF90_FORMAT_64BIT )
--^
nf_ncdf.f90(361): error #6601: In a CASE statement, the case-value must be
a constant expression.   [NF90_FORMAT_64BIT]
   case ( NF90_FORMAT_64BIT )
--^
nf_ncdf.f90(361): error #6612: In a CASE statement, the case-value must be
of type INTEGER, CHARACTER, or LOGICAL.   [NF90_FORMAT_64BIT]
   case ( NF90_FORMAT_64BIT )
--^
nf_ncdf.f90(361): error #6611: The case-value must be of the same type as
the case-expr.   [NF90_FORMAT_64BIT]
   case ( NF90_FORMAT_64BIT )
--^
nf_ncdf.f90(363): error #6404: This name does not have a type, and must
have an explicit type.   [NF90_FORMAT_NETCDF4]
   case ( NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC )
--^
nf_ncdf.f90(363): error #6601: In a CASE statement, the case-value must be
a constant expression.   [NF90_FORMAT_NETCDF4]
   case ( NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC )
--^
nf_ncdf.f90(363): error #6612: In a CASE statement, the case-value must be
of type