Here is the arch.make: ############## # source /opt/intel/parallel_studio_xe_2015/psxevars.sh # source /opt/intel/parallel_studio_xe_2017.0.035/psxevars.sh # source /opt/intel/Compiler/11.0/083/bin/ifortvars.sh intel64 # source /opt/intel/impi_5.0.2/bin64/mpivars.sh # This file is part of the SIESTA package. # # Copyright (c) Fundacion General Universidad Autonoma de Madrid: # E.Artacho, J.Gale, A.Garcia, J.Junquera, P.Ordejon, D.Sanchez-Portal # and J.M.Soler, 1996- . # # Use of this software constitutes agreement with the full conditions # given in the SIESTA license, as signed by all legitimate users. # # ------------ # Description: # Intel compiler/mkl V11 on atto # OpenMPI with support for Intel compiler V11 # MKL V11 libraries, including a version of BLACS provided # by Intel for the openmpi framework, # and Intel's own Scalapack, Lapack, and BLAS. # # Execution: # # $(OPENMPI_ROOT)/bin in PATH # $(OPENMPI_ROOT)/lib in LD_LIBRARY_PATH # # mpirun -np NPROCS siesta .... # SIESTA_ARCH=intel-mpi # # FC=mpiifort FC_SERIAL=ifort
#
# You can play with other optimization options
# I am not sure whether the compiler attempts to multithread the code
#
FFLAGS= -w -O2 -mp
FFLAGS_CHECKS=-g -O0 -debug full -traceback -C
FFLAGS_DEBUG= -g
LDFLAGS=
#COMP_LIBS += libncdf.a libfdict.a
RANLIB=echo
#
# You might want to turn off FoX for Intel11
#
DUMMY_FOX=--enable-dummy
#
#
NETCDF_ROOT=/software/lib/netcdf
NETCDF_INCFLAGS=-I$(NETCDF_ROOT)/include
NETCDF_LIBS=-L$(NETCDF_ROOT)/lib64 -lnetcdff -lnetcdf
HDF5_ROOT=/software/lib/hdf5
LIBS +=-L$(HDF5_ROOT)/lib64 -lhdf5_fortran -lhdf5 -lz
FPPFLAGS_CDF=-DCDF -DNCDF_4 -DNCDF_PARALLEL
#
MPI_INTERFACE=libmpi_f90.a
MPI_INCLUDE=. # Note . for no-op
FPPFLAGS_MPI=-DMPI
METIS_LIB=/software/lib/metis/lib/libmetis.a
FPPFLAGS += -DSIESTA__METIS
#
# From the "Intel advisor"
#
#MKLPATH=/opt/intel/composer_xe_2015/mkl/lib/intel64
#MKLPATH=/opt/intel/Compiler/11.0/083/mkl/lib/em64t
MKLPATH=/opt/intel/compilers_and_libraries_2017.0.098/linux/mkl/lib/intel64_lin
SUGGESTED_LIBS=$(MKLPATH)/libmkl_scalapack_lp64.a \
-Wl,--start-group \
$(MKLPATH)/libmkl_intel_lp64.a \
$(MKLPATH)/libmkl_sequential.a \
$(MKLPATH)/libmkl_core.a \
$(MKLPATH)/libmkl_blacs_intelmpi_lp64.a \
-Wl,--end-group \
-lpthread
#
COMP_LIBS += libncdf.a libfdict.a
LIBS=$(SUGGESTED_LIBS) $(NETCDF_LIBS) $(COMP_LIBS) $(METIS_LIB)
#
SYS=nag
FPPFLAGS= $(FPPFLAGS_CDF) $(FPPFLAGS_MPI)
INCFLAGS +=$(NETCDF_INCFLAGS)
#
.F.o:
$(FC) -c $(FFLAGS) $(INCFLAGS) $(FPPFLAGS) $<
.f.o:
$(FC) -c $(FFLAGS) $(INCFLAGS) $<
.F90.o:
$(FC) -c $(FFLAGS) $(INCFLAGS) $(FPPFLAGS) $<
.f90.o:
$(FC) -c $(FFLAGS) $(INCFLAGS) $(FPPFLAGS) $<
#
##############
[]'s,
Camps
On Fri, Sep 23, 2016 at 2:58 AM, Nick Papior <nickpap...@gmail.com> wrote:
> Please attach your entire arch.make file. There are a few unknowns in your
> compilation process.
>
>
>
> 2016-09-23 2:52 GMT+02:00 I. Camps <ica...@gmail.com>:
>
>> Hello,
>>
>> I am trying to compile siesta-4.1-b1 with NetCDF4 but I am getting into
>> troubles :(
>>
>> The errors are (my system info is bellow):
>> ####################
>> mpiifort -E -P -x c -DCDF -DNCDF_4 -DMPI -DNCDF_PARALLEL -I.
>> -I/home/icamps/Temp/SIESTA/siesta-4.1-b1/Src/NCDF/src
>> /home/icamps/Temp/SIESTA/siesta-4.1-b1/Src/NCDF/src/nf_ncdf.F90 | sed -e
>> 's/NEWLINE/\n/g;/^$/d;/^\!.*&/d;
>> s/[[:space:]]*##[[:space:]]*\([^[:space:]]*\)/\1/g;
>> s/[[:space:]]*#\([^i][^[:space:]]*\)/"\1"/g; s:/ /://:g;
>> s/"endif"/\n#endif/g' > nf_ncdf.f90 #2> /dev/null
>> ifort: command line warning #10155: ignoring option '-x'; argument
>> required
>> ifort: error #10236: File not found: 'c'
>> mpiifort -c -w -O2 -mp -I../../ nf_ncdf.f90
>> nf_ncdf.f90(59): error #7002: Error in opening the compiled module file.
>> Check INCLUDE paths. [NETCDF]
>> use netcdf
>> ------^
>> nf_ncdf.f90(95): error #8237: The character length in a component
>> declaration shall either be a colon, be an initialization expression, or be
>> a specification expression. [GRP]
>> character(len=NF90_MAX_NAME) :: grp = " "
>> -------------------------------------^
>> nf_ncdf.f90(95): error #6404: This name does not have a type, and must
>> have an explicit type. [NF90_MAX_NAME]
>> character(len=NF90_MAX_NAME) :: grp = " "
>> -------------------^
>> nf_ncdf.f90(255): error #6404: This name does not have a type, and must
>> have an explicit type. [NF90_MPIIO]
>> par = iand(NF90_MPIIO,this%mode) == NF90_MPIIO
>> ---------------^
>> nf_ncdf.f90(255): error #6363: The intrinsic data types of the arguments
>> must be the same. [IAND]
>> par = iand(NF90_MPIIO,this%mode) == NF90_MPIIO
>> --------------------------^
>> nf_ncdf.f90(255): error #6404: This name does not have a type, and must
>> have an explicit type. [IAND]
>> par = iand(NF90_MPIIO,this%mode) == NF90_MPIIO
>> ----------^
>> nf_ncdf.f90(257): error #6404: This name does not have a type, and must
>> have an explicit type. [NF90_MPIPOSIX]
>> par = iand(NF90_MPIPOSIX,this%mode) == NF90_MPIPOSIX
>> ---------------^
>> nf_ncdf.f90(259): error #6404: This name does not have a type, and must
>> have an explicit type. [NF90_PNETCDF]
>> par = iand(NF90_PNETCDF,this%mode) == NF90_PNETCDF
>> ---------------^
>> nf_ncdf.f90(297): error #6404: This name does not have a type, and must
>> have an explicit type. [NF90_64BIT_OFFSET]
>> this%mode = IOR(this%mode,NF90_64BIT_OFFSET)
>> ---------------------------------^
>> nf_ncdf.f90(297): error #6363: The intrinsic data types of the arguments
>> must be the same. [IOR]
>> this%mode = IOR(this%mode,NF90_64BIT_OFFSET)
>> ---------------------------------^
>> nf_ncdf.f90(311): error #6404: This name does not have a type, and must
>> have an explicit type. [NF90_SHARE]
>> if ( iand(NF90_SHARE,mode) /= NF90_SHARE ) &
>> -----------------------^
>> nf_ncdf.f90(311): error #6363: The intrinsic data types of the arguments
>> must be the same. [IAND]
>> if ( iand(NF90_SHARE,mode) /= NF90_SHARE ) &
>> ----------------------------------^
>> nf_ncdf.f90(311): error #6404: This name does not have a type, and must
>> have an explicit type. [IAND]
>> if ( iand(NF90_SHARE,mode) /= NF90_SHARE ) &
>> ------------------^
>> nf_ncdf.f90(359): error #6404: This name does not have a type, and must
>> have an explicit type. [NF90_FORMAT_CLASSIC]
>> case ( NF90_FORMAT_CLASSIC )
>> --------------^
>> nf_ncdf.f90(359): error #6601: In a CASE statement, the case-value must
>> be a constant expression. [NF90_FORMAT_CLASSIC]
>> case ( NF90_FORMAT_CLASSIC )
>> --------------^
>> nf_ncdf.f90(359): error #6612: In a CASE statement, the case-value must
>> be of type INTEGER, CHARACTER, or LOGICAL. [NF90_FORMAT_CLASSIC]
>> case ( NF90_FORMAT_CLASSIC )
>> --------------^
>> nf_ncdf.f90(359): error #6611: The case-value must be of the same type as
>> the case-expr. [NF90_FORMAT_CLASSIC]
>> case ( NF90_FORMAT_CLASSIC )
>> --------------^
>> nf_ncdf.f90(361): error #6404: This name does not have a type, and must
>> have an explicit type. [NF90_FORMAT_64BIT]
>> case ( NF90_FORMAT_64BIT )
>> --------------^
>> nf_ncdf.f90(361): error #6601: In a CASE statement, the case-value must
>> be a constant expression. [NF90_FORMAT_64BIT]
>> case ( NF90_FORMAT_64BIT )
>> --------------^
>> nf_ncdf.f90(361): error #6612: In a CASE statement, the case-value must
>> be of type INTEGER, CHARACTER, or LOGICAL. [NF90_FORMAT_64BIT]
>> case ( NF90_FORMAT_64BIT )
>> --------------^
>> nf_ncdf.f90(361): error #6611: The case-value must be of the same type as
>> the case-expr. [NF90_FORMAT_64BIT]
>> case ( NF90_FORMAT_64BIT )
>> --------------^
>> nf_ncdf.f90(363): error #6404: This name does not have a type, and must
>> have an explicit type. [NF90_FORMAT_NETCDF4]
>> case ( NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC )
>> --------------^
>> nf_ncdf.f90(363): error #6601: In a CASE statement, the case-value must
>> be a constant expression. [NF90_FORMAT_NETCDF4]
>> case ( NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC )
>> --------------^
>> nf_ncdf.f90(363): error #6612: In a CASE statement, the case-value must
>> be of type INTEGER, CHARACTER, or LOGICAL. [NF90_FORMAT_NETCDF4]
>> case ( NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC )
>> --------------^
>> nf_ncdf.f90(363): error #6611: The case-value must be of the same type as
>> the case-expr. [NF90_FORMAT_NETCDF4]
>> case ( NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC )
>> --------------^
>> nf_ncdf.f90(363): error #6404: This name does not have a type, and must
>> have an explicit type. [NF90_FORMAT_NETCDF4_CLASSIC]
>> case ( NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC )
>> -----------------------------------^
>> nf_ncdf.f90(363): error #6601: In a CASE statement, the case-value must
>> be a constant expression. [NF90_FORMAT_NETCDF4_CLASSIC]
>> case ( NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC )
>> -----------------------------------^
>> nf_ncdf.f90(363): error #6612: In a CASE statement, the case-value must
>> be of type INTEGER, CHARACTER, or LOGICAL. [NF90_FORMAT_NETCDF4_CLASSIC]
>> case ( NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC )
>> -----------------------------------^
>> nf_ncdf.f90(363): error #6611: The case-value must be of the same type as
>> the case-expr. [NF90_FORMAT_NETCDF4_CLASSIC]
>> case ( NF90_FORMAT_NETCDF4, NF90_FORMAT_NETCDF4_CLASSIC )
>> -----------------------------------^
>> nf_ncdf.f90(3132): catastrophic error: Too many errors, exiting
>> compilation aborted for nf_ncdf.f90 (code 1)
>> make[2]: ***
>> [/home/icamps/Temp/SIESTA/siesta-4.1-b1/tmp-para-netcdf/arch.make:92:
>> nf_ncdf.o] Error 1
>> make[2]: Leaving directory '/home/icamps/Temp/SIESTA/sies
>> ta-4.1-b1/tmp-para-netcdf/NCDF/src'
>> make[1]: *** [Makefile:20: lib] Error 2
>> make[1]: Leaving directory '/home/icamps/Temp/SIESTA/sies
>> ta-4.1-b1/tmp-para-netcdf/NCDF'
>> make: *** [Makefile:372: libncdf.a] Error 2
>> ####################
>>
>>
>> My system:
>> ************************
>> OpenSUSE Tumbleweed (up-to-date)
>> Intel Parallel Studio XE 2017 (Fortran compiler, MPI, MKL, etc.)
>>
>> HDF5 1.8.17 (configured/compiled with FC=mpiifort CC=mpicc ./configure
>> --enable-parallel --prefix=${H5DIR} --with-zlib=${H5DIR} --enable-fortran
>> --enable-fortran2003)
>>
>> NetCDF4.4.1 (configured/compiled with CC=mpicc
>> CPPFLAGS=-I${H5DIR}/include LDFLAGS=-L${H5DIR}/lib64 ./configure
>> --prefix=${NCDIR} --enable-netcdf-4 --enable-pnetcdf)
>>
>> In my arch.make:
>>
>> ETCDF_ROOT=/software/lib/netcdf
>> NETCDF_INCFLAGS=-I$(NETCDF_ROOT)/include
>> NETCDF_LIBS=-L$(NETCDF_ROOT)/lib64 -lnetcdff -lnetcdf -lhdf5_fortran
>> -lhdf5 -lz
>> FPPFLAGS_CDF=-DCDF -DNCDF_4
>>
>> COMP_LIBS += libncdf.a libfdict.a
>>
>> LIBS=$(SUGGESTED_LIBS) $(NETCDF_LIBS) $(COMP_LIBS)
>> ************************
>>
>> []'s,
>>
>> Camps
>>
>
>
>
> --
> Kind regards Nick
>
arch.make
Description: Binary data
