[spctools-discuss] Re: Converting from XCalibur *.raw

2009-04-20 Thread brennmat
Ok, I see. I double clicked the quickbuild.bat file. This resulted in a terminal window showing what's going on, but it was too quick for me to read what's there before the window closed. I then opened a terminal (Start -> Run -> cmd), cd'd to the quickbuild.bat file and ran it. The process stoppe

[spctools-discuss] Re: no spectra in Pep3D

2009-04-20 Thread Natalie Tasman
Hello Federico, I'm still not entirely sure that I understand the problem, but it does sound like a path problem. TPP output files should not be moved once the analysis is run. Maybe you could try to reprocess the data files in their current locations? What I was suggesting was to find out the

[spctools-discuss] Re: Converting from XCalibur *.raw

2009-04-20 Thread DD
1) a)Ofcourse one quick work around is to make a processing method that has rawfile.exe selected as a program to run. Then you can have this proc. meth. produce an excel (or whatever format) file of output. Note there is a whole slew of scriptable parameters that can be added. b)C:\Xcalibur\syst

[spctools-discuss] Re: no spectra in Pep3D

2009-04-20 Thread fto...@gmail.com
Hi Natalie, so if I understand correctly the blue squares which do not show any link to "ions" after clicking on them in Pep3D figures were not included in the Pepxml file. Anyway the problem which I am experiencing is also this: I would expect to see a figure of the msms spectrum as soon as I cli

[spctools-discuss] Re: Converting from XCalibur *.raw

2009-04-20 Thread Matthew Chambers
I think you pretty much have it covered. We don't compile with MSVC though, we use Boost Build. The MSVC project is just there because I use MSVC as a development environment. If you want an easy way to build, just run quickbuild.bat. -Matt brennmat wrote: > Dear Matt > > I tried to apply yo

[spctools-discuss] Re: Converting from XCalibur *.raw

2009-04-20 Thread brennmat
Thanks for this suggestion. I tried rawfile.exe from the XDK examples. It does export the data from the ECD, but there are a few issues: 1. I'd like to call it from a batch script or from XCalibur to automatically extract the data from the raw files without user intervention. I don't know if/how