Hello Jun,
The option is not in the interface yet, as you noticed. If you want to run
Libra w/no centroiding, just generate the condition file, then go to
Petunia's Browse Files, Edit that file, and change the line that goes
something like:
to
It should be towards the end of the file. Save
Hello Ludovic,
There is no problem with the offsets. It is supposed to point to that
line. indexmzXML is a very old and clunky program, and isn't handling
some unexpected whitespace in the trapper's output. is the correct line that the index should point to.
Thanks for your careful testing a
Xin,
If you did search an indexed database (*.hdr) then remove the *.hdr
extension in the sequest.params file (and possibly in the
I really appreciate if anyone can help me with this issue. Thank you!
>
> On May 4, 10:04 am, Xin Wei wrote:
>> Another thing I'd like to point out, I am seeing
Hi Xin,
If you can upload a screen shot of what files are in your working directory
and a screen shot of the error code, I can take a look at that.
Tamanna
On Tue, May 5, 2009 at 5:10 PM, Xin Wei wrote:
>
> I really appreciate if anyone can help me with this issue. Thank you!
>
> On May 4, 10:04
I really appreciate if anyone can help me with this issue. Thank you!
On May 4, 10:04 am, Xin Wei wrote:
> Another thing I'd like to point out, I am seeing similar problem as
> another thread stated by Thomas (April 27).
>
> He stated: "The protein names appear with the appendix unmapped like
>
Hello Gautam,
The version of X!Tandem which is bundled with both Windows and linux
versions of the TPP includes the k-score plugin. We routinely use
this algorithm on both systems.
-Natalie
On May 5, 2009, at 9:07 AM, Taejoon Kwon wrote:
>
> Hi Gautam,
>
> I am running X!Tandem with k-sco
Hi Gautam,
I am running X!Tandem with k-score on linux, independently to TPP, and
it works fine.
You can incorporate k-score plugin with X!tandem, by following the
instruction of CPAS page:
https://proteomics.fhcrc.org/CPAS/Project/Published%20Experiments/Tandem%20Pluggable%20Scoring/begin.view?
