Not a problem! In the end I decided just to remove all of the titins from
my database - it shouldn't have a huge effect on my results - and I was
indeed able to run all of my datasets to completion. Thanks for all of your
help!
Emily
On Friday, November 6, 2020 at 8:25:56 PM UTC-5 David
Hello again Emily,
Apologies for the delay but I needed a bit more time to look into this.
You are absolutely right about the titins causing this issue. The problem
is the significant overlap in peptides in this very large titin group.
Your database contains 343 variations of titin with
Hi Nathan,
In case you want to build something that closely resembles 5.2.0, you can
follow the steps on this page:
http://tools.proteomecenter.org/wiki/index.php?title=TPP_5.2.0:_Installing_on_Ubuntu_18.04_LTS
making sure to use revision 7909. Alternatively, you can use an older
compiler to
Hi Nathan,
These are some bugs in the TPP externals that have been fixed in the more
recent versions of the code. You can either pull the offending files from
a more recent version of the code, use an up-to-date trunk version of the
code (and report any bugs you find ;), or wait until we make
I have extracted version 5.2.0 on my computer and am running Ubuntu
20.04.1. I have also followed the instructions on the BUILD_LINUX file that
comes with the distribution. I believe I have installed the dependencies.
When I navigate into the "release_5-2-0" directory and run "make all," I
