Re: [spctools-discuss] Precursor Intensity after Comet search

2021-09-16 Thread Will Comstock
Thank you David, exactly what I was looking for! Best, -Will On Thursday, September 16, 2021 at 11:31:43 AM UTC-4 David Shteynberg wrote: > Hi Will, > > You can use option -PREC in advanced options for xinteract "Analyze > Peptides" results to populate this column.Alternatively you can run

Re: [spctools-discuss] Precursor Intensity after Comet search

2021-09-16 Thread 'David Shteynberg' via spctools-discuss
Hi Will, You can use option -PREC in advanced options for xinteract "Analyze Peptides" results to populate this column.Alternatively you can run InteractParser with -I flag to get the same values in the pepXML results. Cheers, -David On Thu, Sep 16, 2021 at 8:11 AM Will Comstock wrote: > H

[spctools-discuss] Precursor Intensity after Comet search

2021-09-16 Thread Will Comstock
Hello, After Comet searching mzXML files, appending the "Precursor Intensity" column in the pepXML viewer reveals that it contains no values. Is there a way to make Comet retrieve/retain precursor intensities for later use? Would running XPRESS in label-free mode essentially accomplish this? I