Scaffold can do both SpectrumMill and Mascot as far as I know, among
others.
On Oct 7, 10:20 am, Taejoon Kwon linusben.ute...@googlemail.com
wrote:
I am not sure about Spectum Mill. But iProphet and Scaffold is working
for combining
multiple search engine results (iProphet is included in
(that is, which vendor version you tested against?).
Natalie
On Wed, Jul 15, 2009 at 11:34 AM, Chris Hughes chrishu...@gmail.com wrote:
The file is Micromass data. It is not odd for the size to read 0K,
this is some sort of artifact of it being a .raw folder. The file is
not corrupt
a reminder that the masswolf centroid mode is experimental, as
noted in the usage statement.
Matt, how is PWIZ centroiding? Can msconvert be used to apply this
signal processing and output a processed mzXML file?
-Natalie
On Wed, Jul 15, 2009 at 11:57 AM, Chris Hughes chrishu
suggestions a try and let us know how it goes.
Natalie
On Thu, Jul 16, 2009 at 8:39 AM, Chris Hughes chrishu...@gmail.com wrote:
I see that the mzML converter in the TPP offers the centroid option in
the Petunia interface. I assume this also uses Masswolf for
centroiding? At this point
this from within the command line interface.
Chris
On Jul 16, 4:04 pm, Chris Hughes chrishu...@gmail.com wrote:
Natalie,
I am trying the msconvert way as well, then I can compare the two. Am
I correct in thinking, that in msconvert, using the command
msconvert myfile.raw --filter
Thanks Matt.
That being said, I have a batch of profile data now that I will likely
use the masswolf centroid option to deal with so I can search it in
XTandem. Is there any way to batch process using Masswolf with the
centroiding option? I notice its not part of the TPP.
Chris
On Jul 15, 2:46
Nevermind, figured it out. If you choose to hide peptides, it wont
show it in the list.
On Jun 26, 1:47 pm, chr12is chrishu...@gmail.com wrote:
Hi all,
I had a question about Gaggle. So I installed the firegoose add-on, so
I could broadcast using Gaggle from the TPP. But the Gaggle toolbar
the quotes around the input file 'glob').
--Luis
On Thu, Apr 23, 2009 at 10:08 AM, Chris Hughes chrishu...@gmail.com wrote:
I am having trouble getting this to work. I have 170 files in a
directory.
If I navigate to the directory in command prompt and type: xinteract
*pep.xml it will go
, Luis Mendoza lmend...@systemsbiology.org wrote:
Hi Chris,
Did you try:
xinteract '*.pep.xml' -Ninteract.pep.xml -p0.05 -l9 -OAp
-X-m0.15-nR,10-nK,8-L
(note the quotes around the input file 'glob').
--Luis
On Thu, Apr 23, 2009 at 10:08 AM, Chris Hughes chrishu...@gmail.com wrote
