Re: [spctools-discuss] Index mzXML file error

2018-03-20 Thread Pavel
Hi Luis, Thank you for your answer. Pavel -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.co

[spctools-discuss] Index mzXML file error

2018-03-17 Thread Pavel
Hi, I try to re-index some mzXML files (SWATH wiff files converted to mzML with AB Sciex convertor and then using MSConvert for mzML to mzXML conversion) with TPP, but the new files are not created. The error below still occurs. Any idea? Thanks COMMAND 1 [SAT MAR 17 16:42:17 2018]

Re: [spctools-discuss] protein identification FDR

2013-03-29 Thread Pavel
). Thanks again, Pavel -- You received this message because you are subscribed to the Google Groups spctools-discuss group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email

[spctools-discuss] protein identification FDR

2013-03-28 Thread Pavel
and proteins were x%“. Thank you Pavel -- You received this message because you are subscribed to the Google Groups spctools-discuss group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send

[spctools-discuss] Re: Replicate data processing

2013-03-14 Thread Pavel
appreciate your help, thanks. Pavel the procedure you wrote the same Dne pátek, 1. března 2013 17:51:05 UTC+1 Jason Winget napsal(a): Hi Pavel, I believe that the way to merge data is as follows: 1. Merge the pep.xml results (from a single search engine) using InteractParser

Re: [spctools-discuss] Installation problem (perl?) - tpp 4.6.1

2013-02-18 Thread Pavel
Hi All, Finally, I decided to install TPP on another PC - there was no internet connection and possible problems with upgrade to a newer version of Perl so this is the easiest way. If anyone has the same problem, the solution is as describe above (installation of missing perl modules) -

Re: [spctools-discuss] Installation problem (perl?) - tpp 4.6.1

2013-02-13 Thread Pavel
Hi VaI, Thank you for your answer. I checked the file and it is identical. So I think the problem is Perl. Pavel -- You received this message because you are subscribed to the Google Groups spctools-discuss group. To unsubscribe from this group and stop receiving emails from it, send

Re: [spctools-discuss] Installation problem (perl?) - tpp 4.6.1

2013-02-13 Thread Pavel
it - I will have to call someone familiar with this kind of stuff probably :) Thanks again and I will let you know whether it helps or not. Pavel -- You received this message because you are subscribed to the Google Groups spctools-discuss group. To unsubscribe from this group and stop

[spctools-discuss] Installation problem (perl?) - tpp 4.6.1

2013-02-12 Thread Pavel
) is the problem, I did not try to re-install(?) it yet as I run Mascot on this PC and do not want to disrupt it (I am not into IT :) Any help would be appreciated. Thank you Pavel -- You received this message because you are subscribed to the Google Groups spctools-discuss group. To unsubscribe from