you can get trunk by subversion checkout:
svn co
https://sashimi.svn.sourceforge.net/svnroot/sashimi/trunk/trans_proteomic_pipeline
tpp-trunk
or just visit the URL below and select 'Download GNU tarball':
http://sashimi.svn.sourceforge.net/viewvc/sashimi/trunk/trans_proteomic_pipeline/
O
Brian
that is great news! We have a user who is stumped on this, so I'd like
to get access to the trunk code.
I can not see it from http://sourceforge.net/projects/sashimi/files/
Is there a way to get access to it?
Thanks
Simon Michnowicz
On Apr 17, 2:30 am, Brian Pratt wrote:
> I actually fixed
I actually fixed this back in February, but it's in the current ("trunk")
code and not the 4.3 release.
Brian
On Thu, Apr 15, 2010 at 5:34 PM, Simon Michnowicz <
simon.michnow...@gmail.com> wrote:
> Brian
> my apologies, the pepXML file was indeed broken. Mascot2XML took a
> FASTA entry like
> >
Brian
my apologies, the pepXML file was indeed broken. Mascot2XML took a
FASTA entry like
>tr|A0N7J4|V6-N-D-N-J1.1 protein (Fragment) Tax_Id=9606
>[Homo sapiens]
Into
Which breaks the pepXML viewer, and I imagine xinteract.
We have a version of Mascot2XML from TPP v4.3. Is there a more rec
Brian,
the pepXML was created using Mascot2XML. The pepXML file that was
input to xinteract does not contain the entry
"tr|Q78E99|MRXR"
My understanding is that xinteract opens the database mentioned in the
pepXML file to extract information.
Regards
Simon Michnowicz
On Apr 16, 1:09 am, Brian
