[spctools-discuss] Re: TPP 4.1.1 - Linux: Problem at compilation

2009-01-23 Thread Oana
Hi, locate DynaLoader /opt/ActivePerl-5.8/lib/DynaLoader.pm /usr/lib/perl5/5.8.8/i386-linux-thread-multi/DynaLoader.pm You should be right with the different perl versions installed but I don't know how to set it in the right way... - In the MakeFile.config.incl: # perl

[spctools-discuss] Re: ASAPRatio - multi-threading

2009-01-23 Thread Oded
Hi Walter, The actual performance are of course dependent on the data and analysis but it is possible to use one core and single thread for most of TPP functions. There is a specific issue with ASAPratio that make the calculations rather slow but using the same files and similar analysis with

[spctools-discuss] Re: TPP 4.1.1 - Linux: Problem at compilation

2009-01-23 Thread Oana
Hi again, what we also tried: considering a part of the error message: [...] /public/tppb/tpp/src/../perl/ProphetModels.pl /public/tppb/tpp/ src/../build/linux/ProphetModels.pl We suppose that the ProphetModels.pl file should be copied in .../ build/linux directory but it's not the case. If

[spctools-discuss] Re: ASAPRatio - multi-threading

2009-01-23 Thread Natalie Tasman
Hello, To be clear, the TPP code is quite straightforward, and only single threaded. The TPP is fairly I/O-heavy, so a multicore system *might* see a (slight) improvement if the OS balances system calls to the other core(s). But in general, the TPP is not multithreaded nor written to take

[spctools-discuss] Re: TPP 4.1.1 - Linux: Problem at compilation

2009-01-23 Thread Natalie Tasman
Looking again at some of the previous messages, I see a possible issue with your mismatch of PERL_LIB and PERL_LIB_CORE. Also, you should specify PERL_BIN, if the default perl (which perl) doesn't match the version mentioned in your PERL_LIB and PERL_LIB_CORE lines-- they all need to be the same.