[spctools-discuss] Re: mzXML to MGF issues with mzxml2other

2009-03-11 Thread Natalie Tasman
Hi Peter, mzxml2other is a retired program. It's only kept in the distribution to maintain existing workflows. It is unmaintained, and has been replaced by mzxml2search. Please try this newer program and let us know how it goes. Best, Natalie On Mar 11, 2009, at 9:11 PM, ha...@uow.edu

[spctools-discuss] mzXML to MGF issues with mzxml2other

2009-03-11 Thread ha...@uow.edu.au
Hi all, I've had this problem intermittently and I've looked over the archives without success. I'm using TPP 4.2.0 on a Windows box, via the Petunia interface. Occasionally, when I convert an mzXML to an MGF for MASCOT searching and then do the MASCOT search I get an error telling me the MGF fil

[spctools-discuss] Re: re-posting iPROPHET

2009-03-11 Thread David Shteynberg
Hi Alex, 1) If I understand your message you really have one distinct experiment. iProphet is desigend such that if you analyze all your results in one xinteract command you don't have to worry about the models you have to enable or disable 2) The experiment model comes in when you have sever