[spctools-discuss] Re: xinteract returns "0" for all peptide prophet probabilities

2009-07-29 Thread Natalie Tasman
Hi Scott, Thanks for your feedback and I'm glad David is taking a look. I just want to remind everyone that svn trunk (which you're working with) is development code. If you want stable results stick with the official releases. -Natalie On Tue, Jul 28, 2009 at 6:35 PM, Scott Stansfield wrote

[spctools-discuss] Re: Example pepXML files

2009-07-29 Thread Jimmy Eng
fyi - I sent Ravi a couple of example files. Ravi Tharakan wrote: > Bump? Anyone? > > On Fri, Jul 24, 2009 at 3:11 PM, Ravi Tharakan wrote: >> Hi everyone. We are working on a mass spec analysis system, that >> parses in search engine outputs, and we'd like to be able to support >> the output fo

[spctools-discuss] Re: xinteract returns "0" for all peptide prophet probabilities

2009-07-29 Thread David Shteynberg
Hello Scott, It sounds like the model PeptideProphet generates with the SVN version of the TPP fails the model quality controls on your data. I cannot be sure of the reason without seeing the data. Please post the file to our FTP site, instructions here: http://tools.proteomecenter.org/wiki/i

[spctools-discuss] Re: Example pepXML files

2009-07-29 Thread Ravi Tharakan
Bump? Anyone? On Fri, Jul 24, 2009 at 3:11 PM, Ravi Tharakan wrote: > Hi everyone. We are working on a mass spec analysis system, that > parses in search engine outputs, and we'd like to be able to support > the output for PeptideProphet analyses. Is it possible for us to get > some example files