I have analyzed a data file using peptide prophet. I got results.
But when I am analyzing by iprophet i see a blank page . can anyone tell me
what does it mean.
Where is the problem?
Regards,
Sudarshan
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Dear members,
I want to use peptide sequences from the result after the peptide prophet
search. But the sequences also contains modification mass in it.
P.GSM[147.04]GLPGPKGSSGDPGKPGEAGNA.G
How can we remove it. so that the column of sequences can be converted into
fasta files.
Reg,
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I feel like there is a problem in your conversion.
Better, validate the search parameters (which you are using at present)
with some *known (may be in you lab old data file) *correct file (raw or
mzml). See, to confirm if the search parameters you are using are working.
If the problem still
Hello TPP Team,
I want to use St. Peter tool in TPP for Label free quantification of some
dataset.
Once I go to TPP Tools--> Quantify Label Free (MS2), the web page
redirected to the login page when I login again some error is coming as
under:
[image: image.png]
Could you please through some
Hi there,
I am new at the analyses on proteomics. I am analysing a set of experiments
I retrieved from Peptide atlas. The organism is Homo sapiens, and it has
been made available in 2013, using Exactive orbitrap from Thermo
Scientific. They comprise 3 replicates and were fractioned 3 times.
