Re: [spctools-discuss] Re: No prot-MODELS

[pbell . science]

Hi Luis,

I suspect that my problem may be due to multiple installations of TPP (from 
this post):

https://groups.google.com/forum/#!msg/spctools-discuss/Tq-i-7SVoJE/4XZcq4EGCgAJ;context-place=forum/spctools-discuss


I had originally installed 5.1 in a preferred location, but parts of TPP 
didn't run - so I uninstalled and installed at default path. Unknowingly 
I've done all my analysis in the location of what was the old installation.


The temporary fix in the above thread didn't work for me when I tried to 
repeat it (substituting in the appropriate path).


Please could you tell me is there a fix that you'd recommend? or will 
have I reinstall? (I'd prefer not to if possible - there's several days 
worth of searches etc in there and I'm concerned I'll mess up file paths). 
- would it help if I sent over an example interact.prot.xml file?


Thanks

Pete 





On Tuesday, 12 June 2018 15:47:47 UTC-7, pbell@gmail.com wrote:
>
> Hi Luis,
>
> I've got the same problem with my dataset (also a large dataset, combining 
> multiple experiments). - No models html file is generated. 
>
> Please can you tell me if this issue was resolved?
>
> Thanks
> Pete
>
>
> On Monday, 7 May 2018 19:01:28 UTC-7, Luis wrote:
>>
>> Hi Heeyoun,
>>
>> Does it seem that the file is complete when you open it in the 
>> ProtXMLViewer?  (can you see the last protein group, for example?)  If so, 
>> maybe there is an issue with the script that generates the models html 
>> page.  Are you able to share the interact.prot.xml file so I can test it 
>> locally?  If so, feel free to email it to me directly.
>>
>> Cheers,
>> --Luis
>>
>>
>> On Mon, May 7, 2018 at 5:44 PM, Heeyoun Hwang  wrote:
>>
>>> Hi, Luis
>>>
>>> Thank you for your kindness.
>>>
>>> I opened the ProtXMLViewer with interact.prot.xml file, but 
>>> interact.prot-MODEL.html file was not automatically generated.
>>>
>>> The MODEL.html file is not exist, so I cannot checked that is corrupt or 
>>> broken and I cannot delete it.
>>>
>>> In other words, PepXMLViewer can generate interact.pep-MODEL.html file. 
>>> PepXMLViewer is fine.
>>>
>>> This interact.prot.xml has 47k protein entries. Is this too many number 
>>> to generate the model?
>>>
>>> Best,
>>>
>>> Heeyoun
>>>
>>>
>>>
>>>
>>> 2018년 5월 8일 화요일 오전 7시 24분 29초 UTC+9, Luis 님의 말:

 Hello,

 The MODELS.html file should be auto-generated when you open the 
 ProtXMLViewer (if one does not exist).  If for some reason the models file 
 already exists but is somehow not displaying or is corrupt/broken, the 
 easiest thing to do is to delete that models file and re-open the 
 ProtXMLViewer.  

 Let us know if that still fails, and of any errors that you may notice 
 in this case.

 Hope this helps,
 --Luis


 On Fri, May 4, 2018 at 2:55 AM, Heeyoun Hwang  
 wrote:

> Hi, all again,
>
> Is there anybody to help me, please?
>
> I want to get prot-MODELS.html file which was not automatically 
> generated.
>
> Thank you.
>
> Heeyoun Hwang
>
> 2018년 5월 1일 화요일 오후 5시 12분 52초 UTC+9, Heeyoun Hwang 님의 말:
>
>> Hi,
>>
>> I have to use TPP for large DATA sets including 24 RAW files.
>>
>> Most search process have been worked well, but prot-MODELS.html file 
>> is not generated.
>>
>> Surely, interact.prot.xml and its index is good.
>>
>> How can I get the MODELS.html file?
>>
>> Regards,
>>
>> Heeyoun Hwang
>>
>>
>>
>> -- 
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>

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>>
>>

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Re: [spctools-discuss] Re: No prot-MODELS

[pbell . science]

Hi Luis,

I've got the same problem with my dataset (also a large dataset, combining 
multiple experiments). - No models html file is generated. 

Please can you tell me if this issue was resolved?

Thanks
Pete


On Monday, 7 May 2018 19:01:28 UTC-7, Luis wrote:
>
> Hi Heeyoun,
>
> Does it seem that the file is complete when you open it in the 
> ProtXMLViewer?  (can you see the last protein group, for example?)  If so, 
> maybe there is an issue with the script that generates the models html 
> page.  Are you able to share the interact.prot.xml file so I can test it 
> locally?  If so, feel free to email it to me directly.
>
> Cheers,
> --Luis
>
>
> On Mon, May 7, 2018 at 5:44 PM, Heeyoun Hwang  > wrote:
>
>> Hi, Luis
>>
>> Thank you for your kindness.
>>
>> I opened the ProtXMLViewer with interact.prot.xml file, but 
>> interact.prot-MODEL.html file was not automatically generated.
>>
>> The MODEL.html file is not exist, so I cannot checked that is corrupt or 
>> broken and I cannot delete it.
>>
>> In other words, PepXMLViewer can generate interact.pep-MODEL.html file. 
>> PepXMLViewer is fine.
>>
>> This interact.prot.xml has 47k protein entries. Is this too many number 
>> to generate the model?
>>
>> Best,
>>
>> Heeyoun
>>
>>
>>
>>
>> 2018년 5월 8일 화요일 오전 7시 24분 29초 UTC+9, Luis 님의 말:
>>>
>>> Hello,
>>>
>>> The MODELS.html file should be auto-generated when you open the 
>>> ProtXMLViewer (if one does not exist).  If for some reason the models file 
>>> already exists but is somehow not displaying or is corrupt/broken, the 
>>> easiest thing to do is to delete that models file and re-open the 
>>> ProtXMLViewer.  
>>>
>>> Let us know if that still fails, and of any errors that you may notice 
>>> in this case.
>>>
>>> Hope this helps,
>>> --Luis
>>>
>>>
>>> On Fri, May 4, 2018 at 2:55 AM, Heeyoun Hwang  
>>> wrote:
>>>
 Hi, all again,

 Is there anybody to help me, please?

 I want to get prot-MODELS.html file which was not automatically 
 generated.

 Thank you.

 Heeyoun Hwang

 2018년 5월 1일 화요일 오후 5시 12분 52초 UTC+9, Heeyoun Hwang 님의 말:

> Hi,
>
> I have to use TPP for large DATA sets including 24 RAW files.
>
> Most search process have been worked well, but prot-MODELS.html file 
> is not generated.
>
> Surely, interact.prot.xml and its index is good.
>
> How can I get the MODELS.html file?
>
> Regards,
>
> Heeyoun Hwang
>
>
>
> -- 
 You received this message because you are subscribed to the Google 
 Groups "spctools-discuss" group.
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 an email to spctools-discu...@googlegroups.com.
 To post to this group, send email to spctools...@googlegroups.com.
 Visit this group at https://groups.google.com/group/spctools-discuss.
 For more options, visit https://groups.google.com/d/optout.

>>>
>>> -- 
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>>
>
>

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Re: [spctools-discuss] Re: No prot-MODELS

[Luis Mendoza]

Hi Heeyoun,

Does it seem that the file is complete when you open it in the
ProtXMLViewer?  (can you see the last protein group, for example?)  If so,
maybe there is an issue with the script that generates the models html
page.  Are you able to share the interact.prot.xml file so I can test it
locally?  If so, feel free to email it to me directly.

Cheers,
--Luis


On Mon, May 7, 2018 at 5:44 PM, Heeyoun Hwang  wrote:

> Hi, Luis
>
> Thank you for your kindness.
>
> I opened the ProtXMLViewer with interact.prot.xml file, but
> interact.prot-MODEL.html file was not automatically generated.
>
> The MODEL.html file is not exist, so I cannot checked that is corrupt or
> broken and I cannot delete it.
>
> In other words, PepXMLViewer can generate interact.pep-MODEL.html file.
> PepXMLViewer is fine.
>
> This interact.prot.xml has 47k protein entries. Is this too many number to
> generate the model?
>
> Best,
>
> Heeyoun
>
>
>
>
> 2018년 5월 8일 화요일 오전 7시 24분 29초 UTC+9, Luis 님의 말:
>>
>> Hello,
>>
>> The MODELS.html file should be auto-generated when you open the
>> ProtXMLViewer (if one does not exist).  If for some reason the models file
>> already exists but is somehow not displaying or is corrupt/broken, the
>> easiest thing to do is to delete that models file and re-open the
>> ProtXMLViewer.
>>
>> Let us know if that still fails, and of any errors that you may notice in
>> this case.
>>
>> Hope this helps,
>> --Luis
>>
>>
>> On Fri, May 4, 2018 at 2:55 AM, Heeyoun Hwang  wrote:
>>
>>> Hi, all again,
>>>
>>> Is there anybody to help me, please?
>>>
>>> I want to get prot-MODELS.html file which was not automatically
>>> generated.
>>>
>>> Thank you.
>>>
>>> Heeyoun Hwang
>>>
>>> 2018년 5월 1일 화요일 오후 5시 12분 52초 UTC+9, Heeyoun Hwang 님의 말:
>>>
 Hi,

 I have to use TPP for large DATA sets including 24 RAW files.

 Most search process have been worked well, but prot-MODELS.html file is
 not generated.

 Surely, interact.prot.xml and its index is good.

 How can I get the MODELS.html file?

 Regards,

 Heeyoun Hwang



 --
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>>> Groups "spctools-discuss" group.
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>>>
>>
>> --
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Re: [spctools-discuss] Re: No prot-MODELS

[Heeyoun Hwang]

Hi, Luis

Thank you for your kindness.

I opened the ProtXMLViewer with interact.prot.xml file, but 
interact.prot-MODEL.html file was not automatically generated.

The MODEL.html file is not exist, so I cannot checked that is corrupt or 
broken and I cannot delete it.

In other words, PepXMLViewer can generate interact.pep-MODEL.html file. 
PepXMLViewer is fine.

This interact.prot.xml has 47k protein entries. Is this too many number to 
generate the model?

Best,

Heeyoun




2018년 5월 8일 화요일 오전 7시 24분 29초 UTC+9, Luis 님의 말:
>
> Hello,
>
> The MODELS.html file should be auto-generated when you open the 
> ProtXMLViewer (if one does not exist).  If for some reason the models file 
> already exists but is somehow not displaying or is corrupt/broken, the 
> easiest thing to do is to delete that models file and re-open the 
> ProtXMLViewer.  
>
> Let us know if that still fails, and of any errors that you may notice in 
> this case.
>
> Hope this helps,
> --Luis
>
>
> On Fri, May 4, 2018 at 2:55 AM, Heeyoun Hwang  > wrote:
>
>> Hi, all again,
>>
>> Is there anybody to help me, please?
>>
>> I want to get prot-MODELS.html file which was not automatically generated.
>>
>> Thank you.
>>
>> Heeyoun Hwang
>>
>> 2018년 5월 1일 화요일 오후 5시 12분 52초 UTC+9, Heeyoun Hwang 님의 말:
>>
>>> Hi,
>>>
>>> I have to use TPP for large DATA sets including 24 RAW files.
>>>
>>> Most search process have been worked well, but prot-MODELS.html file is 
>>> not generated.
>>>
>>> Surely, interact.prot.xml and its index is good.
>>>
>>> How can I get the MODELS.html file?
>>>
>>> Regards,
>>>
>>> Heeyoun Hwang
>>>
>>>
>>>
>>> -- 
>> You received this message because you are subscribed to the Google Groups 
>> "spctools-discuss" group.
>> To unsubscribe from this group and stop receiving emails from it, send an 
>> email to spctools-discu...@googlegroups.com .
>> To post to this group, send email to spctools...@googlegroups.com 
>> .
>> Visit this group at https://groups.google.com/group/spctools-discuss.
>> For more options, visit https://groups.google.com/d/optout.
>>
>
>

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Re: [spctools-discuss] Re: No prot-MODELS

[Luis Mendoza]

Hello,

The MODELS.html file should be auto-generated when you open the
ProtXMLViewer (if one does not exist).  If for some reason the models file
already exists but is somehow not displaying or is corrupt/broken, the
easiest thing to do is to delete that models file and re-open the
ProtXMLViewer.

Let us know if that still fails, and of any errors that you may notice in
this case.

Hope this helps,
--Luis


On Fri, May 4, 2018 at 2:55 AM, Heeyoun Hwang  wrote:

> Hi, all again,
>
> Is there anybody to help me, please?
>
> I want to get prot-MODELS.html file which was not automatically generated.
>
> Thank you.
>
> Heeyoun Hwang
>
> 2018년 5월 1일 화요일 오후 5시 12분 52초 UTC+9, Heeyoun Hwang 님의 말:
>
>> Hi,
>>
>> I have to use TPP for large DATA sets including 24 RAW files.
>>
>> Most search process have been worked well, but prot-MODELS.html file is
>> not generated.
>>
>> Surely, interact.prot.xml and its index is good.
>>
>> How can I get the MODELS.html file?
>>
>> Regards,
>>
>> Heeyoun Hwang
>>
>>
>>
>> --
> You received this message because you are subscribed to the Google Groups
> "spctools-discuss" group.
> To unsubscribe from this group and stop receiving emails from it, send an
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> To post to this group, send email to spctools-discuss@googlegroups.com.
> Visit this group at https://groups.google.com/group/spctools-discuss.
> For more options, visit https://groups.google.com/d/optout.
>

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