[mailto:spctools-disc...@googlegroups.com] On Behalf Of Jimmy Eng
> Sent: Thursday, January 15, 2009 3:33 PM
> To: spctools-discuss@googlegroups.com
> Subject: [spctools-discuss] Re: XPRESS command failed
>
>
> Camilo,
>
> Thanks for looking that up. The .mzXML extension should not be par
Can I be taken off the list please? RDR
-Original Message-
From: spctools-discuss@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of Jimmy Eng
Sent: Thursday, January 15, 2009 3:33 PM
To: spctools-discuss@googlegroups.com
Subject: [spctools-discuss] Re: XPRESS
I tried again and made sure the output path was the same of that for
the testband4.mzXML location but it still shows the same error. I
thought there could be a problem with the file name, so I tried
changing the name of the pep.xml file but didn't work either.
Camilo
On Jan 15, 3:32 pm, Jimmy En
Camilo,
Thanks for looking that up. The .mzXML extension should not be part of
the base_name attribute so all is well there.
The previous error message you printed out suggested that the XPRESS
found the base_name reported as
c:/Inetpub/wwwroot/ISB/data/testband4
so it is looking for
Hi Jimmy. I found the following values for the "SOME NAME" attribute:
The mzXML file exists in:
C:\Inetpub\wwwroot\ISB\data\band4\Test\testband4.mzXML
You're right, I much as I can see, the name of the .mzXML file (i.e.
testband4) isn't anywhere in the SOME_NAME entry. Is this the
problem?
Camilo,
Can you look into the *.pep.xml file and report what the "base_name"
attribute values are?
You can fine them in lines that look like:
Hi David. Yes, I can see the file with PepXMLViewer with peptides,
> probabilities and protein names and the file does exist in the
> specified fol
Hi David. Yes, I can see the file with PepXMLViewer with peptides,
probabilities and protein names and the file does exist in the
specified folder. Our data was generated from an HCTultra instrument
from Bruker. We exported the chromatogram analisys including all MS
full scan into a mzXML file usi
Before we can help you have to try to understand the nature of the message:
XPRESS error - cannot open file from basename
c:/Inetpub/wwwroot/ISB/data/testband4
This usually suggest a problem upstream of XPRESS.
Can you verify that this file exists? Can you open your
interact.pep.xml file in Pe
