I can confirm the bug on Natty. The bug itself depends on an icon theme
— for example, it works with Faenza and Gnome-colors.
As a workaround, I deleted pidgin icons from these themes — this cause
pidgin to use the default icon, which is working fine.
Please reopen.
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You received this bug
There's a bug here:
http://developer.pidgin.im/ticket/2629
It looks like it is about the panel icon, and supposedly it affects this other
bug (about icon transparency):
https://bugs.launchpad.net/ubuntu/+source/pidgin/+bug/447548
It mentions the blink effect... maybe it will also fix this bug?