Martin,
On Tue, Jul 20, 2010 at 2:23 PM, Martin Skurla buja...@gmail.com wrote:
about surf nodes = sorry I don't get the point. Surf nodes are all
nodes except leafs?
Well, I was thinking in terms of defining a filter or a depth to surf
(e.g. depth 1) and then I would be able to click on a node
Kei,
we are extremely interested in Neo4j support for Cytoscape, as we are
seing a lot of interest for Graphs from the Computational Genomics and
Bioinformatics crowd, but in practice, a lot of work is done in iGraph
and R, and limited to very basic analytics and the built in graph
algos. I think
Hi.
I'm a core developer of Cytoscape and playing with Neo4j as a backend
for Cytoscape. Currently, this is my personal project, but we are
interested in Neo4j to provide users building their own network
databases locally from Cytoscape.
In the next version (2.8), Cytoscape can support most of
Hi!
On 07/21/2010 07:10 AM, Arijit Mukherjee wrote:
I don't know if this is the actual functionality or not - I just
wanted to find out if there's a way to display the graph like what I
said - without the links to the subreference node, only the discrete
clusters...
There's two ways you can
Hi!
On 07/21/2010 10:33 PM, Keiichiro Ono wrote:
In the next version (2.8), Cytoscape can support most of the features
supported by open source graph visualization packages have, such as
custom node graphics layers. Some example are available here:
http://tumblr.keiono.net/
This is really
Hi Anders.
This could be of some interest:
http://wiki.neo4j.org/content/Google_Summer_of_Code_for_Neo4j_Visualization
We have been participating in Google Summer of Code as a mentoring
organization for past five years and looks this is a great project for
next year.
Does Cytoscape support
Hi,
I've been using neo4j for some time now and evaluated various GUI solutions.
(cytoscape, graphviz / xdot, gephi, plantUML)
My conclusion is that the neo4j eclipse gui is often the best solution for
complex structured graphs.
However, I have a few suggestions for improvement. (In order of
Hi!
Thanks for your input.
I'm working on a new version of neoclipse and hope to commit my changes
soon. Just waiting for my code base to get reasonably consistent :-)
The biggest change is that neoclipse will handle threads in a correct
manner, that is, there will only be exactly one
Hi there,
also, I would think an export/import db to/from GraphML button would
be nice and handy.
Cheers,
/peter neubauer
COO and Sales, Neo Technology
GTalk: neubauer.peter
Skype peter.neubauer
Phone +46 704 106975
LinkedIn http://www.linkedin.com/in/neubauer
Twitter
Hi to all,
I am a GSoC (Google Summer of Code) student working on adding support
for Neo4j in Gephi. I appreciate you to look at Gephi as a very nice
visualization tool. This week I will also finish the article
summarizing what have I done and what is needed to do. In fact Gephi
has much more
Martin,
On Tue, Jul 20, 2010 at 1:06 PM, Martin Skurla I am a GSoC (Google
Summer of Code) student working on adding support
for Neo4j in Gephi. I appreciate you to look at Gephi as a very nice
visualization tool. This week I will also finish the article
summarizing what have I done and what
Also, hav you tried to open big graphs with Gephi? I recently tried to
open the Neo4j db generated by the test of
http://github.com/neo4j/neo4j-spatial (run mvn clean test), but
things slowed down to a trickle. Not sure if what the limit is for
Gephi, and how to open/surf nodes with a depth-1
Peter,
about editing support = this is true. I firstly focused on core
abilities like importing and exporting including filtering abilities.
The fact is that another student is working on Data Laboratory, so the
place where it will be possible to change data. We are also thinking
about setting
Sticking with the original thread topic of requirements for neoclipse.
I find that if I accidentally open a view of a graph with more than
about 500 nodes to layout then the whole lot takes a very long time to
come back. Is there a way to either speed it up, or let the user
interrupt the process
My two-pence regarding neoclipse -
I am working on a set of data with about one million links between
nodes. It takes quite a long time to display that in neoclipse - so I
cut down the data set to about 5000 links between 500 or so nodes, and
there are about 6/7 connected components (like
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