Re: PySpark: toPandas() vs collect() execution graph differences

2021-11-11 Thread Georg Heiler
https://stackoverflow.com/questions/46832394/spark-access-first-n-rows-take-vs-limit might be related Best, Georg Am Fr., 12. Nov. 2021 um 07:48 Uhr schrieb Sergey Ivanychev < sergeyivanyc...@gmail.com>: > Hi Gourav, > > Please, read my question thoroughly. My problem is with the plan of the >

arbitrary state handling in python API

2020-09-08 Thread Georg Heiler (TU Vienna)
Hi, how can I apply arbitrary state handling as provided by the method: mapGroupsWithState in the java API from the python side? Currently, it looks like this method is not available on spark 3.x in the structured streaming python API. Best, Georg

Re: Parallelising JDBC reads in spark

2020-05-25 Thread Georg Heiler
database. Best, Georg Am Mo., 25. Mai 2020 um 08:16 Uhr schrieb Manjunath Shetty H < manjunathshe...@live.com>: > Hi Georg, > > Thanks for the response, can please elaborate what do mean by change data > capture ? > > Thanks > Manjunath > -------

Re: Parallelising JDBC reads in spark

2020-05-24 Thread Georg Heiler
Why don't you apply proper change data capture? This will be more complex though. Am Mo., 25. Mai 2020 um 07:38 Uhr schrieb Manjunath Shetty H < manjunathshe...@live.com>: > Hi Mike, > > Thanks for the response. > > Even with that flag set data miss can happen right ?. As the fetch is > based on

Re: Optimising multiple hive table join and query in spark

2020-03-15 Thread Georg Heiler
Did you only partition or also bucket by the join column? Are ORCI indices active i.e. the JOIN keys sorted when writing the files? Best, Georg Am So., 15. März 2020 um 15:52 Uhr schrieb Manjunath Shetty H < manjunathshe...@live.com>: > Mostly the concern is the reshuffle. Even though all the

Re: [pyspark 2.4.3] nested windows function performance

2019-10-21 Thread Georg Heiler
No, as you shuffle each time again (you always partition by different windows) Instead: could you choose a single window (w3 with more columns =fine granular) and the nfilter out records to achieve the same result? Or instead: df.groupBy(a,b,c).agg(sort_array(collect_list(foo,bar,baz)) and then

[no subject]

2019-09-19 Thread Georg Heiler
Hi, How can I create an initial state by hands so that structured streaming files source only reads data which is semantically (i.e. using a file path lexicographically) greater than the minimum committed initial state? Details here:

Re: Creating custom Spark-Native catalyst/codegen functions

2019-08-22 Thread Georg Heiler
unctions in my user application without having to fork or modify Spark > itself. > > Thanks, > > Arwin > > From: Georg Heiler > Sent: Wednesday, August 21, 11:18 PM > Subject: Re: Creating custom Spark-Native catalyst/codegen functions > To: Arwin Tio > Cc: user@spark.ap

Re: Creating custom Spark-Native catalyst/codegen functions

2019-08-22 Thread Georg Heiler
Look at https://github.com/DataSystemsLab/GeoSpark/tree/master/sql/src/main/scala/org/apache/spark/sql/geospark sql for an example. Using custom function registration and functions residing inside sparks private namespace should work. But I am not aware of a public user facing API. Is there any

Re: [Pyspark 2.4] Best way to define activity within different time window

2019-06-11 Thread Georg Heiler
For grouping with each: look into grouping sets https://jaceklaskowski.gitbooks.io/mastering-spark-sql/spark-sql-multi-dimensional-aggregation.html Am Di., 11. Juni 2019 um 06:09 Uhr schrieb Rishi Shah < rishishah.s...@gmail.com>: > Thank you both for your input! > > To calculate moving average

Re: [pyspark 2.3+] Bucketing with sort - incremental data load?

2019-05-31 Thread Georg Heiler
Bucketing will only help you with joins. And these usually happen on a key. You mentioned that there is no such key in your data. If just want to search through large quantities of data sorting an partitioning by time is left. Rishi Shah schrieb am Sa. 1. Juni 2019 um 05:57: > Thanks much for

Re: [pyspark] Use output of one aggregated function for another aggregated function within the same groupby

2019-04-24 Thread Georg Heiler
Is analytical window funktions to rank the result and then filter to the desired rank. Rishi Shah schrieb am Do. 25. Apr. 2019 um 05:07: > Hi All, > > [PySpark 2.3, python 2.7] > > I would like to achieve something like this, could you please suggest best > way to implement (perhaps highlight

Re: use rocksdb for spark structured streaming (SSS)

2019-03-10 Thread Georg Heiler
Use https://github.com/chermenin/spark-states instead Am So., 10. März 2019 um 20:51 Uhr schrieb Arun Mahadevan : > > Read the link carefully, > > This solution is available (*only*) in Databricks Runtime. > > You can enable RockDB-based state management by setting the following > configuration

Re: Spark Sql group by less performant

2018-12-10 Thread Georg Heiler
See https://databricks.com/blog/2016/05/19/approximate-algorithms-in-apache-spark-hyperloglog-and-quantiles.html you most probably do not require exact counts. Am Di., 11. Dez. 2018 um 02:09 Uhr schrieb 15313776907 <15313776...@163.com >: > i think you can add executer memory > > 15313776907 >

Re: What is BDV in Spark Source

2018-11-10 Thread Georg Heiler
Just renamed. Breeze allows you to perform efficient linear algebra if fitting blas backend is installed. Soheil Pourbafrani schrieb am Fr. 9. Nov. 2018 um 20:07: > Hi, > > Checking the Spark Sources, I faced with a type BDV: > > breeze.linalg.{DenseVector => BDV} > > and they used it in

Re: Best way to process this dataset

2018-06-18 Thread Georg Heiler
use pandas or dask If you do want to use spark store the dataset as parquet / orc. And then continue to perform analytical queries on that dataset. Raymond Xie schrieb am Di., 19. Juni 2018 um 04:29 Uhr: > I have a 3.6GB csv dataset (4 columns, 100,150,807 rows), my environment > is 20GB ssd

Re: best practices to implement library of custom transformations of Dataframe/Dataset

2018-06-18 Thread Georg Heiler
I believe explicit is better than implicits, however as you mentioned the notation is very nice. Therefore, I suggest https://medium.com/@mrpowers/chaining-custom-dataframe-transformations-in-spark-a39e315f903c to use df.transform(myFunction) Valery Khamenya schrieb am Mo., 18. Juni 2018 um

Re: GroupBy in Spark / Scala without Agg functions

2018-05-29 Thread Georg Heiler
Why do you group if you do not want to aggregate? Isn't this the same as select distinct? Chetan Khatri schrieb am Di., 29. Mai 2018 um 20:21 Uhr: > All, > > I have scenario like this in MSSQL Server SQL where i need to do groupBy > without Agg function: > > Pseudocode: > > > select

Re: Spark parse fixed length file [Java]

2018-04-13 Thread Georg Heiler
I am not 100% sure if spark is smart enough to achieve this using a single pass over the data. If not you could create a java udf for this which correctly parses all the columns at once. Otherwise you could enable Tungsten off heap memory which might speed things up. lsn24

Re: run huge number of queries in Spark

2018-04-04 Thread Georg Heiler
See https://gist.github.com/geoHeil/e0799860262ceebf830859716bbf in particular: You will probably want to use sparks imperative (non SQL) API: .rdd .reduceByKey { (count1, count2) => count1 + count2 }.map { case ((word, path), n) => (word, (path, n)) }.toDF i.e. builds an inverted index which

Re: Multiple Kafka Spark Streaming Dataframe Join query

2018-03-14 Thread Georg Heiler
Did you try spark 2.3 with structured streaming? There watermarking and plain sql might be really interesting for you. Aakash Basu schrieb am Mi. 14. März 2018 um 14:57: > Hi, > > > > *Info (Using):Spark Streaming Kafka 0.8 package* > > *Spark 2.2.1* > *Kafka 1.0.1* >

Upgrades of streaming jobs

2018-03-08 Thread Georg Heiler
Hi What is the state of spark structured streaming jobs and upgrades? Can checkpoints of version 1 be read by version 2 of a job? Is downtime required to upgrade the job? Thanks

Re: Efficient way to compare the current row with previous row contents

2018-02-12 Thread Georg Heiler
with a few examples please. > > Thanks in advance again ! > > Cheers, > D > > On Mon, Feb 12, 2018 at 6:03 PM, Georg Heiler <georg.kf.hei...@gmail.com> > wrote: > >> You should look into window functions for spark sql. >> Debabrata Ghosh <mailford...@gmail.c

Re: Efficient way to compare the current row with previous row contents

2018-02-12 Thread Georg Heiler
You should look into window functions for spark sql. Debabrata Ghosh schrieb am Mo. 12. Feb. 2018 um 13:10: > Hi, > Greetings ! > > I needed some efficient way in pyspark to execute a > comparison (on all the attributes) between the

Re: Spark cannot find tables in Oracle database

2018-02-11 Thread Georg Heiler
I had the same problem. You need to uppercase all tables prior to storing them in oracle. Gourav Sengupta schrieb am So. 11. Feb. 2018 um 10:44: > Hi, > > since you are using the same user as the schema, I do not think that there > is an access issue. Perhaps you might

Re: [Spark ML] Positive-Only Training Classification in Scala

2018-01-15 Thread Georg Heiler
I do not know that module, but in literature PUL is the exact term you should look for. Matt Hicks <m...@outr.com> schrieb am Mo., 15. Jan. 2018 um 20:56 Uhr: > Is it fair to assume this is what I need? > https://github.com/ispras/pu4spark > > > > On Mon, Jan 15, 20

Re: [Spark ML] Positive-Only Training Classification in Scala

2018-01-15 Thread Georg Heiler
As far as I know spark does not implement such algorithms. In case the dataset is small http://scikit-learn.org/stable/modules/generated/sklearn.svm.OneClassSVM.html might be of interest to you. Jörn Franke schrieb am Mo., 15. Jan. 2018 um 20:04 Uhr: > I think you look

Re: Can spark shuffle leverage Alluxio to abtain higher stability?

2017-12-21 Thread Georg Heiler
Die you try to use the yarn Shuffle Service? chopinxb schrieb am Do. 21. Dez. 2017 um 04:43: > In my practice of spark application(almost Spark-SQL) , when there is a > complete node failure in my cluster, jobs which have shuffle blocks on the > node will completely fail

Re: Feature generation / aggregate functions / timeseries

2017-12-14 Thread Georg Heiler
Also the rdd stat counter will already conpute most of your desired metrics as well as df.describe https://databricks.com/blog/2015/06/02/statistical-and-mathematical-functions-with-dataframes-in-spark.html Georg Heiler <georg.kf.hei...@gmail.com> schrieb am Do. 14. Dez. 2017 um 19:40:

Re: Feature generation / aggregate functions / timeseries

2017-12-14 Thread Georg Heiler
Look at custom UADF functions. schrieb am Do. 14. Dez. 2017 um 09:31: > Hi dear spark community ! > > I want to create a lib which generates features for potentially very > large datasets, so I believe spark could be a nice tool for that. > Let me explain what I need to do

Re: Row Encoder For DataSet

2017-12-07 Thread Georg Heiler
You are looking for an UADF. Sandip Mehta schrieb am Fr. 8. Dez. 2017 um 06:20: > Hi, > > I want to group on certain columns and then for every group wants to apply > custom UDF function to it. Currently groupBy only allows to add aggregation > function to GroupData.

Re: Loading a large parquet file how much memory do I need

2017-11-27 Thread Georg Heiler
How many columns do you need from the big file? Also how CPU / memory intensive are the computations you want to perform? Alexander Czech schrieb am Mo. 27. Nov. 2017 um 10:57: > I want to load a 10TB parquet File from S3 and I'm trying to decide what > EC2

Re: Spark Streaming Kerberos Issue

2017-11-22 Thread Georg Heiler
gt; mdkhajaasm...@gmail.com> wrote: > >> We use oracle JDK. we are on unix. >> >> On Wed, Nov 22, 2017 at 12:31 PM, Georg Heiler <georg.kf.hei...@gmail.com >> > wrote: >> >>> Do you use oracle or open jdk? We recently had an issue with open jdk: &

Re: Spark Streaming Kerberos Issue

2017-11-22 Thread Georg Heiler
, renewal is enabled by running the script every eight > hours. User gets renewed by the script every eight hours. > > On Wed, Nov 22, 2017 at 12:27 PM, Georg Heiler <georg.kf.hei...@gmail.com> > wrote: > >> Did you pass a keytab? Is renewal enabled in your kdc? >> Kha

Re: Spark Streaming Kerberos Issue

2017-11-22 Thread Georg Heiler
Did you pass a keytab? Is renewal enabled in your kdc? KhajaAsmath Mohammed schrieb am Mi. 22. Nov. 2017 um 19:25: > Hi, > > I have written spark stream job and job is running successfully for more > than 36 hours. After around 36 hours job gets failed with kerberos

Re: best spark spatial lib?

2017-10-10 Thread Georg Heiler
What about someting like gromesa? Anastasios Zouzias schrieb am Di. 10. Okt. 2017 um 15:29: > Hi, > > Which spatial operations do you require exactly? Also, I don't follow what > you mean by combining logical operators? > > I have created a library that wraps Lucene's spatial

Re: Offline environment

2017-09-25 Thread Georg Heiler
Just build a fat jar and do not apply --packages serkan ta? schrieb am Mo. 25. Sep. 2017 um 09:24: > Hi, > > Everytime i submit spark job, checks the dependent jars from remote maven > repo. > > Is it possible to set spark first load the cached jars rather than > looking

Re: using R with Spark

2017-09-24 Thread Georg Heiler
No. It is free for use might need r studio server depending on which spark master you choose. Felix Cheung schrieb am So. 24. Sep. 2017 um 22:24: > Both are free to use; you can use sparklyr from the R shell without > RStudio (but you probably want an IDE) > >

Re: RDD order preservation through transformations

2017-09-14 Thread Georg Heiler
Usually spark ml Models specify the columns they use for training. i.e. you would only select your columns (X) for model training but metadata i.e. target labels or your date column (y) would still be present for each row. schrieb am Do., 14. Sep. 2017 um 10:42 Uhr:

Re: Collecting Multiple Aggregation query result on one Column as collectAsMap

2017-08-29 Thread Georg Heiler
ean, stddev etc and generate some custom stats , > or also may not run all the predefined stats but only subset of them on the > particular column. > I was thinking if we need to write some custom code which does this in one > action(job) that would work for me > > > > On Tue,

Re: Collecting Multiple Aggregation query result on one Column as collectAsMap

2017-08-28 Thread Georg Heiler
Rdd only Patrick <titlibat...@gmail.com> schrieb am Mo. 28. Aug. 2017 um 20:13: > Ah, does it work with Dataset API or i need to convert it to RDD first ? > > On Mon, Aug 28, 2017 at 10:40 PM, Georg Heiler <georg.kf.hei...@gmail.com> > wrote: > >> What abo

Re: Collecting Multiple Aggregation query result on one Column as collectAsMap

2017-08-28 Thread Georg Heiler
What about the rdd stat counter? https://spark.apache.org/docs/0.6.2/api/core/spark/util/StatCounter.html Patrick schrieb am Mo. 28. Aug. 2017 um 16:47: > Hi > > I have two lists: > > >- List one: contains names of columns on which I want to do aggregate >

Re: different behaviour linux/Unix vs windows when load spark context in scala method called from R function using rscala package

2017-08-27 Thread Georg Heiler
Why don't you simply use sparklyr for a more R native integration of spark? Simone Pallotta schrieb am So. 27. Aug. 2017 um 09:47: > In my R code, I am using rscala package to bridge to a scala method. in > scala method I have initialized a spark context to be

Re: some Ideas on expressing Spark SQL using JSON

2017-07-26 Thread Georg Heiler
Because sparks dsl partially supports compile time type safety. E.g. the compiler will notify you that a sql function was misspelled when using the dsl opposed to the plain sql string which is only parsed at runtime. Sathish Kumaran Vairavelu schrieb am Di. 25. Juli

Re: Flatten JSON to multiple columns in Spark

2017-07-18 Thread Georg Heiler
You need to have spark implicits in scope Richard Xin schrieb am Di. 18. Juli 2017 um 08:45: > I believe you could use JOLT (bazaarvoice/jolt > ) to flatten it to a json string and > then to dataframe or dataset. > >

Re: Flatten JSON to multiple columns in Spark

2017-07-18 Thread Georg Heiler
df.select ($"Info.*") should help Chetan Khatri schrieb am Di. 18. Juli 2017 um 08:06: > Hello Spark Dev's, > > Can you please guide me, how to flatten JSON to multiple columns in Spark. > > *Example:* > > Sr No Title ISBN Info > 1 Calculus Theory 1234567890

Re: custom column types for JDBC datasource writer

2017-07-05 Thread Georg Heiler
master and see > https://github.com/apache/spark/commit/c7911807050227fcd13161ce090330d9d8daa533 > . > This option will be available in the next release. > > // maropu > > On Thu, Jul 6, 2017 at 1:25 PM, Georg Heiler <georg.kf.hei...@gmail.com> > wrote: > >> Hi, &

Re: [Spark Sql/ UDFs] Spark and Hive UDFs parity

2017-06-16 Thread Georg Heiler
vant here. Can > you elaborate? > > > > On Thu, Jun 15, 2017 at 4:18 AM, Georg Heiler <georg.kf.hei...@gmail.com> > wrote: > >> What about using map partitions instead? >> >> RD <rdsr...@gmail.com> schrieb am Do. 15. Juni 2017 um 06:52: >

Re: [Spark Sql/ UDFs] Spark and Hive UDFs parity

2017-06-15 Thread Georg Heiler
What about using map partitions instead? RD schrieb am Do. 15. Juni 2017 um 06:52: > Hi Spark folks, > > Is there any plan to support the richer UDF API that Hive supports for > Spark UDFs ? Hive supports the GenericUDF API which has, among others > methods like

Re: Spark structured streaming: Is it possible to periodically refresh static data frame?

2017-04-21 Thread Georg Heiler
Is Scala’s > “Futures” the way to achieve this? > > > > Thanks, > > Hemanth > > > > > > *From: *Tathagata Das <tathagata.das1...@gmail.com> > > > *Date: *Friday, 21 April 2017 at 0.03 > *To: *Hemanth Gudela <hemanth.gud...@qvantel.co

Re: Spark structured streaming: Is it possible to periodically refresh static data frame?

2017-04-20 Thread Georg Heiler
y, 21 April 2017 at 0.03 > *To: *Hemanth Gudela <hemanth.gud...@qvantel.com> > *Cc: *Georg Heiler <georg.kf.hei...@gmail.com>, "user@spark.apache.org" < > user@spark.apache.org> > > > *Subject: *Re: Spark structured streaming: Is it possible to perio

Re: Spark structured streaming: Is it possible to periodically refresh static data frame?

2017-04-20 Thread Georg Heiler
What about treating the static data as a (slow) stream as well? Hemanth Gudela schrieb am Do., 20. Apr. 2017 um 22:09 Uhr: > Hello, > > > > I am working on a use case where there is a need to join streaming data > frame with a static data frame. > > The streaming

Re: Problem with Execution plan using loop

2017-04-16 Thread Georg Heiler
Hi I had a similar problem. For me, using the rdd stat counter helped a lot. Check out http://stackoverflow.com/questions/41169873/spark-dynamic-dag-is-a-lot-slower-and-different-from-hard-coded-dag and

Re: Any NLP library for sentiment analysis in Spark?

2017-04-12 Thread Georg Heiler
I upgraded some dependencies here https://github.com/geoHeil/spark-corenlp and currently use it for an University project. Would also be interested in better libraries for spark. Tokenization and lemmatizaion work fine. Regards Georg hosur narahari schrieb am Mi. 12. Apr.

spark off heap memory

2017-04-09 Thread Georg Heiler
Hi, I thought that with the integration of project Tungesten, spark would automatically use off heap memory. What for are spark.memory.offheap.size and spark.memory.offheap.enabled? Do I manually need to specify the amount of off heap memory for Tungsten here? Regards, Georg

Re: Spark dataframe, UserDefinedAggregateFunction(UDAF) help!!

2017-03-24 Thread Georg Heiler
Maybe an udf to flatten is an interesting option as well. http://stackoverflow.com/q/42888711/2587904 would a uadf very more performant? shyla deshpande schrieb am Fr. 24. März 2017 um 04:04: > Thanks a million Yong. Great help!!! It solved my problem. > > On Thu, Mar

Re: Spark Job Performance monitoring approaches

2017-02-15 Thread Georg Heiler
I know of the following tools https://sites.google.com/site/sparkbigdebug/home https://engineering.linkedin.com/blog/2016/04/dr-elephant-open-source-self-serve-performance-tuning-hadoop-spark https://github.com/SparkMonitor/varOne https://github.com/groupon/sparklint Chetan Khatri

Re: MultiLabelBinarizer

2017-02-08 Thread Georg Heiler
I believe only http://stackoverflow.com/questions/34167105/using-spark-mls-onehotencoder-on-multiple-columns is currently possible i.e. using multiple stringindexers and then multiple one hot encoders one per column Madabhattula Rajesh Kumar schrieb am Do., 9. Feb. 2017 um

Re: Anyone has any experience using spark in the banking industry?

2017-01-18 Thread Georg Heiler
Have a look at mesos together with myriad I.e. Yarn on mesos. kant kodali schrieb am Mi. 18. Jan. 2017 um 22:51: > Anyone has any experience using spark in the banking industry? I have > couple of questions. > > 1. Most of the banks seem to care about number of pending

Re: Nested ifs in sparksql

2017-01-11 Thread Georg Heiler
tions ? what do you mean by slow ? can > you share a snippet ? > > > > On Tue, Jan 10, 2017 8:15 PM, Georg Heiler georg.kf.hei...@gmail.com > wrote: > > Maybe you can create an UDF? > > Raghavendra Pandey <raghavendra.pan...@gmail.com> schrieb am Di., 10.

Re: Nested ifs in sparksql

2017-01-10 Thread Georg Heiler
Maybe you can create an UDF? Raghavendra Pandey schrieb am Di., 10. Jan. 2017 um 20:04 Uhr: > I have of around 41 level of nested if else in spark sql. I have > programmed it using apis on dataframe. But it takes too much time. > Is there anything I can do to

Re: top-k function for Window

2017-01-04 Thread Georg Heiler
What about https://github.com/myui/hivemall/wiki/Efficient-Top-k-computation-on-Apache-Hive-using-Hivemall-UDTF Koert Kuipers schrieb am Mi. 4. Jan. 2017 um 16:11: > i assumed topk of frequencies in one pass. if its topk by known > sorting/ordering then use priority queue

Re: Spark kryo serialization register Datatype[]

2016-12-21 Thread Georg Heiler
I already set .set("spark.serializer", "org.apache.spark.serializer.KryoSerializer") to enable kryo and .set("spark.kryo.registrationRequired", "true") to force kryo. Strangely, I see the issue of this missing Dataset[] Trying to register regular classes like Date

Re: spark reshape hive table and save to parquet

2016-12-08 Thread Georg Heiler
https://databricks.com/blog/2016/02/09/reshaping-data-with-pivot-in-apache-spark.html Anton Kravchenko schrieb am Do., 8. Dez. 2016 um 17:53 Uhr: > Hello, > > I wonder if there is a way (preferably efficient) in Spark to reshape hive > table and save it to parquet.

Re: Spark sql generated dynamically

2016-12-02 Thread Georg Heiler
Are you sure? I think this is a column wise and not a row wise operation. ayan guha <guha.a...@gmail.com> schrieb am Fr. 2. Dez. 2016 um 15:17: > You are looking for window functions. > On 2 Dec 2016 22:33, "Georg Heiler" <georg.kf.hei...@gmail.com> wrote: > >

Spark sql generated dynamically

2016-12-02 Thread Georg Heiler
Hi, how can I perform a group wise operation in spark more elegant? Possibly dynamically generate SQL? Or would you suggest a custom UADF? http://stackoverflow.com/q/40930003/2587904 Kind regards, Georg

Re: build models in parallel

2016-11-29 Thread Georg Heiler
They https://www.youtube.com/watch?v=R-6nAwLyWCI use such functionality via pyspark. Xiaomeng Wan schrieb am Di., 29. Nov. 2016 um 17:54 Uhr: > I want to divide big data into groups (eg groupby some id), and build one > model for each group. I am wondering whether I can

Fill na with last value

2016-11-17 Thread Georg Heiler
How can I fill nan values in spark with the last or the last good known value? Here is a minimal example http://stackoverflow.com/q/40592207/2587904 So far I tried a window function but unfortunately received only nan values. Kind regards Georg