Hi, >From searching through the mail archive I understand that the error means that the CasConsumer cannot be found. I just don't understand why the PiperFileRunner can find org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes but not org.apache.ctakes.core.cc.CasConsumer. I am using the user installation so I didn't build from source myself. I looked in ..apache-ctakes-4.0.0\lib\ctakes-core-4.0.0.jar and there both CasConsumer.class and XmiWriterCasConsumerCtakes.class are present in \org\apache\ctakes\core\cc. Any suggestions are highly appreciated.
Peter > Hi, > > When I first used the clinical pipeline I did so through the Collection > Processing Engine Configuration. In the last step results are written to > XML (I think this is the default CAS Consumer). As a next step I wanted to > start experimenting with a clinical pipeline so I decided to first create > a pipeline with the cTAKES Simple Pipeline Fabrication. This is my > pipeline: > > package org.apache.ctakes.core.cr > readFiles C:\Reports > add SimpleSegmentAnnotator > add SentenceDetector > add TokenizerAnnotatorPTB > add ContextDependentTokenizerAnnotator > addDescription POSTagger > add Chunker > addDescription adjuster.ChunkAdjuster NP,NP 1 > addDescription adjuster.ChunkAdjuster NP,PP,NP 2 > add DefaultJCasTermAnnotator > add > org.apache.ctakes.assertion.medfacts.cleartk.PolarityFedaCleartkAnalysisEngine > addDescription ClearNLPDependencyParserAE > addLogged ClearNLPSemanticRoleLabelerAE > package org.apache.ctakes.assertion.medfacts.cleartk > addDescription PolarityCleartkAnalysisEngine > addDescription UncertaintyCleartkAnalysisEngine > addDescription HistoryCleartkAnalysisEngine > addDescription ConditionalCleartkAnalysisEngine > addDescription GenericCleartkAnalysisEngine > addDescription SubjectCleartkAnalysisEngine > add org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes > OutputDirectory=C:\cTakesOutput > > This pipeline works when I run it from the command line (bin\runPiperFile > -p "C:\clinicalPipeline2.piper" --user XXXXX --pass "XXXXXX" (with my > actual umls username and pw)). However, it generates XMI output and since > I was using code to parse the XML files I created before I wanted to > create XML output instead. I therefore changed the last line in the above > piper script to: > > add org.apache.ctakes.core.cc.CasConsumer outputDir=C:\cTakesOutput > > When I run the pipeline now I get the following error: > > ERROR PiperFileRunner - MESSAGE LOCALIZATION FAILED: Can't find resource > for bundle java.util.PropertyResourceBundle, key Not AnalysisComponent > org.apache.ctakes.core.cc.CasConsumer > > I must be doing something wrong here but I haven't been able to figure out > what. Maybe it is trivial but I am new to cTakes so any suggestions are > welcome. I am using cTakes 4.0.0. > > Thank you, > > Peter >
