Hi, When I first used the clinical pipeline I did so through the Collection Processing Engine Configuration. In the last step results are written to XML (I think this is the default CAS Consumer). As a next step I wanted to start experimenting with a clinical pipeline so I decided to first create a pipeline with the cTAKES Simple Pipeline Fabrication. This is my pipeline:
package org.apache.ctakes.core.cr readFiles C:\Reports add SimpleSegmentAnnotator add SentenceDetector add TokenizerAnnotatorPTB add ContextDependentTokenizerAnnotator addDescription POSTagger add Chunker addDescription adjuster.ChunkAdjuster NP,NP 1 addDescription adjuster.ChunkAdjuster NP,PP,NP 2 add DefaultJCasTermAnnotator add org.apache.ctakes.assertion.medfacts.cleartk.PolarityFedaCleartkAnalysisEngine addDescription ClearNLPDependencyParserAE addLogged ClearNLPSemanticRoleLabelerAE package org.apache.ctakes.assertion.medfacts.cleartk addDescription PolarityCleartkAnalysisEngine addDescription UncertaintyCleartkAnalysisEngine addDescription HistoryCleartkAnalysisEngine addDescription ConditionalCleartkAnalysisEngine addDescription GenericCleartkAnalysisEngine addDescription SubjectCleartkAnalysisEngine add org.apache.ctakes.core.cc.XmiWriterCasConsumerCtakes OutputDirectory=C:\cTakesOutput This pipeline works when I run it from the command line (bin\runPiperFile -p "C:\clinicalPipeline2.piper" --user XXXXX --pass "XXXXXX" (with my actual umls username and pw)). However, it generates XMI output and since I was using code to parse the XML files I created before I wanted to create XML output instead. I therefore changed the last line in the above piper script to: add org.apache.ctakes.core.cc.CasConsumer outputDir=C:\cTakesOutput When I run the pipeline now I get the following error: ERROR PiperFileRunner - MESSAGE LOCALIZATION FAILED: Can't find resource for bundle java.util.PropertyResourceBundle, key Not AnalysisComponent org.apache.ctakes.core.cc.CasConsumer I must be doing something wrong here but I haven't been able to figure out what. Maybe it is trivial but I am new to cTakes so any suggestions are welcome. I am using cTakes 4.0.0. Thank you, Peter
