[OMPI users] problem w sge 6.2 & openmpi

Hi Rolf, Thanks for answering! Eli Here is qstat -t, when I launch it with 8 processors. It looks to me like it is actually using compute node 8. The mpirun job was submitted on the head node 'nimbus' Tried swapping out hostname for mpirun in the job script. For both 8 and 16

Re: [OMPI users] problem w sge 6.2 & openmpi

I assume it is working with np=8 because the 8 processes are getting launched on the same node as mpirun and therefore there is no call to qrsh to start up any remote processes. When you go beyond 8, mpirun calls qrsh to start up processes on some of the remote nodes. I would suggest first

[OMPI users] problem w sge 6.2 & openmpi

Hi guys, I'm trying to run an example program, mpi-ring, on a rocks cluster. When launched via sge with 8 processors (we have 8 procs per node), the program works fine, but with any more processors and the program fails. I'm using open-mpi 1.3.2, included below, at end of post, is output

Re: [OMPI users] Performance difference on OpenMPI, IntelMPI and ScaliMPI

Ralph, I can't get "opal_paffinity_alone" to work (see below). However, there is a "mpi_affinity_alone" that I tried without any improvement. However, setting: -mca btl_openib_eager_limit 65536 gave a 15% improvement so OpenMPI is now down to 326 (from previous 376 seconds). Still a lot more

Re: [OMPI users] Performance difference on OpenMPI, IntelMPI and ScaliMPI

Okay, one problem is fairly clear. As Terry indicated, you have to tell us to bind or else you lose a lot of performace. Set -mca opal_paffinity_alone 1 on your cmd line and it should make a significant difference. On Wed, Aug 5, 2009 at 8:10 AM, Torgny Faxen wrote: > Ralph,

Re: [OMPI users] Performance difference on OpenMPI, IntelMPI and ScaliMPI

Ralph, I am running through a locally provided wrapper but it translates to: /software/mpi/openmpi/1.3b2/i101017/bin/mpirun -np 144 -npernode 8 -mca mpi_show_mca_params env,file /nobac kup/rossby11/faxen/RCO_scobi/src_161.openmpi/rco2.24pe a) Upgrade.. This will take some time, it will have

Re: [OMPI users] Performance difference on OpenMPI, IntelMPI and ScaliMPI

A comment to the below. I meant the 2x performance was for shared memory communications. --td Message: 3 Date: Wed, 05 Aug 2009 09:55:42 -0400 From: Terry Dontje Subject: Re: [OMPI users] Performance difference on OpenMPI, IntelMPI and ScaliMPI To:

Re: [OMPI users] Performance difference on OpenMPI, IntelMPI and ScaliMPI

If the above doesn't improve anything the next question is do you know what the sizes of the messages are? For very small messages I believe Scali shows a 2x better performance than Intel and OMPI (I think this is due to a fastpath optimization). I remember that mvapich was faster that

Re: [OMPI users] Performance difference on OpenMPI, IntelMPI and ScaliMPI

We've found on certain applications binding to processors can have up to a 2x difference. ScaliMPI automatically binds processes by socket so if you are not running a one process per cpu job each process will land on a different socket. OMPI defaults to not binding at all. You may want to

Re: [OMPI users] Performance difference on OpenMPI, IntelMPI and ScaliMPI

Torgny, We have one know issue in openib btl that it related to IPROBE - https://svn.open-mpi.org/trac/ompi/ticket/1362 Theoretical it maybe source cause of the performance degradation, but for me the performance difference sounds too big. * Do you know what is typical message size for this

Re: [OMPI users] Two remote machines - asymmetric behavior

On Mon, Aug 3, 2009 at 1:41 PM, Ralph Castain wrote: > The only thing that changes is the required connectivity. It sounds to me > like you may have a firewall issue here, where cloud3 is blocking > connectivity from cloud6, but cloud6 is allowing connectivity from cloud3. > >

Re: [OMPI users] Performance difference on OpenMPI, IntelMPI and ScaliMPI

Could you send us the mpirun cmd line? I wonder if you are missing some options that could help. Also, you might: (a) upgrade to 1.3.3 - it looks like you are using some kind of pre-release version (b) add -mca mpi_show_mca_params env,file - this will cause rank=0 to output what mca params it

Re: [OMPI users] Performance difference on OpenMPI, IntelMPI and ScaliMPI

Pasha, no collectives are being used. A simple grep in the code reveals the following MPI functions being used: MPI_Init MPI_wtime MPI_COMM_RANK MPI_COMM_SIZE MPI_BUFFER_ATTACH MPI_BSEND MPI_PACK MPI_UNPACK MPI_PROBE MPI_GET_COUNT MPI_RECV MPI_IPROBE MPI_FINALIZE where MPI_IPROBE is the clear

Re: [OMPI users] Performance difference on OpenMPI, IntelMPI and ScaliMPI

Do you know if the application use some collective operations ? Thanks Pasha Torgny Faxen wrote: Hello, we are seeing a large difference in performance for some applications depending on what MPI is being used. Attached are performance numbers and oprofile output (first 30 lines) from one

[OMPI users] Performance difference on OpenMPI, IntelMPI and ScaliMPI

Hello, we are seeing a large difference in performance for some applications depending on what MPI is being used. Attached are performance numbers and oprofile output (first 30 lines) from one out of 14 nodes from one application run using OpenMPI, IntelMPI and Scali MPI respectively.