FYI -
We upgraded to Open MPI 2.0.1 and this resolved the issue.
Of course, it was not so simple to get there, as the Centos 7.2 default
gcc (4.8.4) produced "internal compiler error" when recompiling NAMD
with OMPI 2.0.1 and 1.10.4. So we had to install a newer compiler. One
interesting
Thank you for the sanity check and recommendations.
I will post my results here when resolved.
Jeff Squyres (jsquyres) wrote:
We did have some kind of stdout/stderr truncation issue a little while ago, but
I don't remember what version it specifically affected.
I would definitely update to at
We did have some kind of stdout/stderr truncation issue a little while ago, but
I don't remember what version it specifically affected.
I would definitely update to at least Open MPI 1.10.4 (lots of bug fixes since
1.10.0). Better would be to update to Open MPI 2.0.1 -- that's the current
$ cat /etc/redhat-release
CentOS Linux release 7.2.1511 (Core)
$ yum list installed | grep openmpi
openmpi.x86_64 1.10.0-10.el7 @base
openmpi-devel.x86_64 1.10.0-10.el7 @base
(1) When I run
$ mpirun -H myhosts -np myprocs executable
