[OMPI users] Help: OpenMPI Compilation in Raspberry Pi

Hi, I am going to compile OpenMPI 1.6.3 in Raspberry Pi and encounter following errors. make[2]: Entering directory `/root/openmpi-1.6.3/opal' CC class/opal_bitmap.lo CC class/opal_free_list.lo CC class/opal_hash_table.lo CC class/opal_list.lo CC

[OMPI users] grpcomm component hier gone...

Hi! The grpcomm component hier seems to have vanished between 1.6.1 and 1.6.3. Why? It seems that the version of slurm we are using (not the latest at the moment) is using it for startup. -- Ake Sandgren, HPC2N, Umea University, S-90187 Umea, Sweden Internet: a...@hpc2n.umu.se Phone: +46 90

Re: [OMPI users] grpcomm component hier gone...

On Thu, 2013-01-03 at 11:15 +0100, Ake Sandgren wrote: > Hi! > > The grpcomm component hier seems to have vanished between 1.6.1 and > 1.6.3. > Why? > It seems that the version of slurm we are using (not the latest at the > moment) is using it for startup. > Hmm it seems it is the

Re: [OMPI users] grpcomm component hier gone...

On Thu, 2013-01-03 at 11:54 +0100, Ake Sandgren wrote: > On Thu, 2013-01-03 at 11:15 +0100, Ake Sandgren wrote: > > Hi! > > > > The grpcomm component hier seems to have vanished between 1.6.1 and > > 1.6.3. > > Why? > > It seems that the version of slurm we are using (not the latest at the > >

Re: [OMPI users] grpcomm component hier gone...

On Jan 3, 2013, at 3:01 AM, Ake Sandgren wrote: > On Thu, 2013-01-03 at 11:54 +0100, Ake Sandgren wrote: >> On Thu, 2013-01-03 at 11:15 +0100, Ake Sandgren wrote: >>> Hi! >>> >>> The grpcomm component hier seems to have vanished between 1.6.1 and >>> 1.6.3. >>> Why?

Re: [OMPI users] grpcomm component hier gone...

On Thu, 2013-01-03 at 06:18 -0800, Ralph Castain wrote: > On Jan 3, 2013, at 3:01 AM, Ake Sandgren wrote: > > > On Thu, 2013-01-03 at 11:54 +0100, Ake Sandgren wrote: > >> On Thu, 2013-01-03 at 11:15 +0100, Ake Sandgren wrote: > >>> Hi! > >>> > >>> The grpcomm

[OMPI users] mpirun - All Nodes Filled

Simple question for today ! I am working on converting a public domain code suite (http://www.JavaSeis.org) to use openmpi rather than mpiJava. So far, all has gone well, other than the usual issues with getting all the paths and variables straightened out. For automation purposes, I would like

Re: [OMPI users] grpcomm component hier gone...

On Jan 3, 2013, at 6:52 AM, Ake Sandgren wrote: > On Thu, 2013-01-03 at 06:18 -0800, Ralph Castain wrote: >> On Jan 3, 2013, at 3:01 AM, Ake Sandgren wrote: >> >>> On Thu, 2013-01-03 at 11:54 +0100, Ake Sandgren wrote: On Thu,

Re: [OMPI users] mpirun - All Nodes Filled

Hmmm...I would say there is a bug in 1.7 then! It isn't recognizing the word "localhost" as being your local host. I'll take a look at it. Thanks! On Jan 3, 2013, at 6:53 AM, Chuck Mosher wrote: > Simple question for today ! > > I am working on converting a public

Re: [OMPI users] grpcomm component hier gone...

On Thu, 2013-01-03 at 07:00 -0800, Ralph Castain wrote: > On Jan 3, 2013, at 6:52 AM, Ake Sandgren wrote: > > > On Thu, 2013-01-03 at 06:18 -0800, Ralph Castain wrote: > >> On Jan 3, 2013, at 3:01 AM, Ake Sandgren wrote: > >> > >>> On Thu,

Re: [OMPI users] grpcomm component hier gone...

On Jan 3, 2013, at 7:07 AM, Ake Sandgren wrote: > On Thu, 2013-01-03 at 07:00 -0800, Ralph Castain wrote: >> On Jan 3, 2013, at 6:52 AM, Ake Sandgren wrote: >> >>> On Thu, 2013-01-03 at 06:18 -0800, Ralph Castain wrote: On Jan 3,

Re: [OMPI users] mpirun - All Nodes Filled

Ralph, Thanks for the response ! If I substitute the output from `hostname` (Chucks-iMac.local) I get the same behavior, but using `hostname -s` (Chucks-iMac) all is well. So, to summarize: Fails: mpirun -host localhost -np 1 java -version mpirun -host `hostname` -np 1 java -version Succeeds:

Re: [OMPI users] grpcomm component hier gone...

On Thu, 2013-01-03 at 07:14 -0800, Ralph Castain wrote: > > Well, it isn't :-) > > configure says: > > --- MCA component grpcomm:pmi (m4 configuration macro) > > checking for MCA component grpcomm:pmi compile mode... dso > > checking if user requested PMI support... no > > checking if MCA

[OMPI users] MPI Java Bindings on Mac OSX

Hi, I've been trying to get a working version of the MPI java bindings on Mac OSX (10.6.8 with Java 1.6.0_37). I ran into a number of issues along the way that I thought I would record here for others who might be foolish enough to try the same ;-) The issues I had to spend time with were:

Re: [OMPI users] MPI Java Bindings on Mac OSX

Chuck, In step 4 you might want to consider the following --prefix=/usr/local/openmpi-1.7rc5 and use the modules software to select which version of openmpi to use. I have to have multiple versions of openmpi available on my macs and this approach has worked well for me. Doug Reeder On Jan

Re: [OMPI users] MPI Java Bindings on Mac OSX

Hi Doug What modules software do you use on the Mac? Would be nice to know :-) On Jan 3, 2013, at 8:34 AM, Doug Reeder wrote: > Chuck, > > In step 4 you might want to consider the following > > --prefix=/usr/local/openmpi-1.7rc5 > > and use the modules software to

Re: [OMPI users] MPI Java Bindings on Mac OSX

Ralph, The source is available at http://modules.sourceforge.net/ Doug On Jan 3, 2013, at 10:49 AM, Ralph Castain wrote: > Hi Doug > > What modules software do you use on the Mac? Would be nice to know :-) > > > On Jan 3, 2013, at 8:34 AM, Doug Reeder wrote: > >>

Re: [OMPI users] MPI Java Bindings on Mac OSX

Greetings Chuck, I tend to agree with Doug. It hope to be able to test soon OpenMPI under Lion/Mountain Lion. If someone has already done so, especially with Java, that could be quite handy. V/R, Daniel Beatty, Ph.D. Computer Scientist, Detonation Sciences Branch Code 474300D 1 Administration

Re: [OMPI users] MPI Java Bindings on Mac OSX

FWIW: I test it regularly on Mountain Lion, without problem. We know that some of the bindings aren't quite right, particularly on some of the collectives, but send/recv is fine On Jan 3, 2013, at 10:09 AM, "Beatty, Daniel D CIV NAVAIR, 474300D" wrote: > Greetings

Re: [OMPI users] MPI Java Bindings on Mac OSX

It's nice to see that this mail list has a lot of activity ! Thanks for the tips, I haven't used modules in quite a few years, having been spoiled by Java ;-) Takes me back to the good old days, spending 10x more time configuring than coding ! Chuck On Jan 3, 2013, at 1:05 PM, Ralph Castain

Re: [OMPI users] Open-mpi running issue and bug

Hi, When I issue the following command as shown in the info listed (http://www.open-mpi.org/community/help/): [home@edge openmpi-1.6.3]$mpirun --bynode --hostfile my_hostfile.txt --tag-output ompi_info -v ompi full --parsable  [home@edge openmpi-1.6.3]$

Re: [OMPI users] Open-mpi running issue and bug

If you are building from a tarball, you don't need nor want to run autogen. All you want to do is run ./configure. If you attempt to run autogen, you'll have to install all the required tools - including an appropriate libtool. Unless you are adding a component to OMPI, you're better off not

[hwloc-users] Single hwloc.h header files that work on linux and windows

I have an application is supposed to work with both windows and linux. To that end, I downloaded hwloc, configured and then included the hwloc header files in my application. I dynamically load the libhwloc.so library and map the functions I need. If libhwloc.so is not there, then I can

[hwloc-users] "-lnuma" missing from pkg-config information?

I just installed hwloc 1.6 on a Linux Red Hat system. libnuma is required for linking -- I receive linker errors if I omit -lnuma, and I see that -lnuma is listed in libhwloc.la under "dependency_libs". However, pkgconfig/hwloc.pc does not mention libnuma. It does mention libpci, though. Does